Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00830 ATGGACGCCGGCGAAGCCCTCTCCGACGATCCGAATCGGCCCAATTCCGCCGCCGACGCAGCTCCGGCCAGCGCCGGCGCGAGGTACAAGCTCATGTCGCCGGCGAAGCTCCCGATCTCGCGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACGTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTCTTTGCTTCATCAAACAGCACATGGTTCCGTGACTTCTGCTGCATCTGCTACATTTCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAACATGGTTCCTGCAGACTCTGACAACCATGCAAGTGAAAAATCTACTCAAGTAGATGGTCAAGGAAAAGCTCAAGTATTTGACTCATCACCATTAGTAAAAAATGAGTTAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATGGATAGCTCAGGAGCTAGTGCCCGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAACAACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAATGGACTTTCCGTTGCAGCCGAGAGAGTATCTGATGATGGATACAACTGGAGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTTAAGAAACTATTTGAGCGCTCTCATGATGGGCAAATGACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGTTACTCTACTGGAACTATAATGTCTATGCAAGAAGAGAGATCTGATAAAGCTTCTTTGACTAGCCGAGATGACAAAGGATCCAATATATGTGGCCAGGGGTCTCACCTGGCTGAGCCTGACAGTACGCCAGAGCTATCGCCTGTAGCAACAAATGATGGTGATCTAGATGGTTCGGGGGTCTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAATTGCTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATCTTGGATGATGGCTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACCGGTTGCCCCGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTGATTACCACATATGAGGGGAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGACAAGCAAGTGCAAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGGATGGGAATTAGCCCAGCTGCTGAAAACACACCAAACAGTCAAGGGAGAATGATGCTTTCTGAATTTGGGGATAGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTACAACGGCGCCGGGGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGTTCTAGAGAAAATCCAAGTGATGGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCTCAGAACATGGGGAGAATACTAATGGGCCCTTAA 1734 0.4637 MDAGEALSDDPNRPNSAADAAPASAGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAHGSVTSAASATFPVTTVCFNTNTVDDRKPSFFEFKPHSRSNMVPADSDNHASEKSTQVDGQGKAQVFDSSPLVKNELAVPSNELSLSSPVQMDSSGASARVEGDLDELNPRSNITTGLQASQVDNRGNGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQMTEIIYKGTHDHPKPQPNRRYSTGTIMSMQEERSDKASLTSRDDKGSNICGQGSHLAEPDSTPELSPVATNDGDLDGSGVLSNRNNDEVDDDDPFSKRRKMELGIADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGQASASGQTRIRPEESDTISLDLGMGISPAAENTPNSQGRMMLSEFGDSQTHTSNSNFKFVHTTTAPGYFGVLNNNSNPYGSRENPSDGPSLNHSAYPCPQNMGRILMGP 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00830 577 MobiDBLite consensus disorder prediction 164 184 - -
Pumo1g00830 577 FunFam WRKY transcription factor 33 384 450 - -
Pumo1g00830 577 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 492 IPR044810 GO:0003700
Pumo1g00830 577 MobiDBLite consensus disorder prediction 296 362 - -
Pumo1g00830 577 MobiDBLite consensus disorder prediction 164 179 - -
Pumo1g00830 577 MobiDBLite consensus disorder prediction 126 147 - -
Pumo1g00830 577 SUPERFAMILY WRKY DNA-binding domain 219 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 FunFam WRKY transcription factor 212 282 - -
Pumo1g00830 577 MobiDBLite consensus disorder prediction 542 565 - -
Pumo1g00830 577 MobiDBLite consensus disorder prediction 1 24 - -
Pumo1g00830 577 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 ProSiteProfiles WRKY domain profile. 217 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 SMART WRKY_cls 397 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 SMART WRKY_cls 222 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 MobiDBLite consensus disorder prediction 542 568 - -
Pumo1g00830 577 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 MobiDBLite consensus disorder prediction 117 147 - -
Pumo1g00830 577 Gene3D WRKY domain 214 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g00830 577 Gene3D WRKY domain 382 458 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00830 Pumo-Chr1 12602921 12608959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00830 32 577 WRKY Transcription Factor Family AT4G26640 57.117 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo1g00830 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00830 - - gmx:100781491 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00830 1 12602921 12608959 Pumo1g00830 1 12602921 12608959 ECH
Pumo1g00830 1 12602921 12608959 Pumo9g01816 9 47284586 47290646 PCT