Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00829 ATGCTGGGACCTAATGCAGATATGCTAGATATCTATGGTACTGTAATTCCCGAAGAACCTGATTCATTTTTGTTAGAGGCAGAGAAATGGAAGATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAAAAAATGGCTGTGAATGATATGGAGACAACTGAATTGCTGATGTCAGAGTTGCGTAAGATGGTGTCCATTTCAGGCAATCCAATTCAGCGATTGGGAGCATACATATTGGAGTCTCTTGTTGCAAGGATGGCTGCTTCAGGAAGCACAATCTACAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTGCTTTATGAAATTTGCCCATACTTCAAGTTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTCCACATAATTGACTTTCAGATTGGCCAGGGAACCCAGTGGGTGAGCCTAATTCAGGCTCTTGCTCGCCGCCCTGTAGGCCCCCCGAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCAGCCTATGCCAGGGGAGGGGAGCTTGATATTGTTGGGAAAAGGCTATCAGCACTTGCACAGTCATGTCATGTACCCTTTGAGTTCAATGCTGTAAGAGTACCTGCTTCTCAGGTGCAACTTGAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCAGTGAACTTTGCCATTAGTCTGCACCATGTGCCAGATGAAAGTGTGAACAGTCACAATCATCGTGACCGGTTGTTGAGATTGGCAAAGCGATTGTCTCCTAAGGTGGTGACTCTGGTTGAGCAGGAATTTAACACCAACAATGCACCGTTCTTTCAGCGTTTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGAATCAATTGATACTGTTCTTCCAAGGGAGCACAAGGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGCGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCACGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAAGGGCTGGCTTTACACCTTATCCATTGAGCTCCGTTATTAATTCTTCAATCAAGGATCTTCTGCAGAGCTACCATGGACACTACACTCTAGAAGAGAGAGATGGTGCACTACTTCTTGGTTGGATGGATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1236 0.4401 MLGPNADMLDIYGTVIPEEPDSFLLEAEKWKMMEMISRGDLKEMLYTCAKKMAVNDMETTELLMSELRKMVSISGNPIQRLGAYILESLVARMAASGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEALKEESEVHIIDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSFSAYARGGELDIVGKRLSALAQSCHVPFEFNAVRVPASQVQLEDLELRPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKRLSPKVVTLVEQEFNTNNAPFFQRFVETMNYYLAVFESIDTVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTRAGFTPYPLSSVINSSIKDLLQSYHGHYTLEERDGALLLGWMDQVLIASCAWR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00829 411 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 405 IPR005202 -
Pumo1g00829 411 Pfam GRAS domain family 41 411 IPR005202 -
Pumo1g00829 411 ProSiteProfiles GRAS family profile. 32 411 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00829 Pumo-Chr1 12597989 12599224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00829 1 411 GRAS Transcription Factor Family AT5G48150 65.375 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo1g00829 GRAS 5.2e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00829 - - gmx:100805672 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00829 1 12597989 12599224 Pumo9g01814 9 47279172 47280785 PCT