Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00825 ATGAACCCTGTTGATTGGGAACAAGAACTGAAGAAGTATGAGGATGTTATAGCTTCAGGTACCAAGTGTATGAAAATAAAGGCCATGGTGATGCTGGCCCGTTTCTCTGAGCATGCCCCTGAGCATGTGTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGAGTTGGCAGTTGAAATTGGTGGACATGGTGCCACTCATTCTTTGATGAGGTTGTTGCCTCAATCTGATGGGAGGATGCAGAAGGTCCTGTTAAAGTGTTTGCTGATTATTGTTAGTTTTTGCAGTGCAAGTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAATTGATCATTGGTTTGTTGAGTTCTTGCACCGATGATACTAGGCGGTATTTGTTGGAGATTTTGAGTGTGTTGGCATTGAGGAGGGATGTTAGGAAGGCACTCACTAGACTAAGAGCTCTTCATTATGTTGTGGAGGCTGCTGGTTTTGGGAGCATGGTGTCAAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACGAGACAGGCTAGGCGCACGCTTGTTGAATTGGGAGCGATACCGGTGCTTGTGGCATTGTTTCGAGACGGAGATCACACCACAAAGCTTGTAGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCCGGTGGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCTTCTGGGAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTGCGGGGCACTTGGTGAGGATTCTGAGAGAAGGTGATGATGAGGCAAAGGCTTCTGCAGCTGATGTGATGTGGGATCTGTCGGGTTACAAGCACTCAACATCCGTGGTCAGGGATTCGGGCGCGATTCCTAATCTTGTTGAACTTTTAAGGAGTGGAAGTGAAGATGTGAAGGTGAATGTTTCCGGGGCATTTGCTCAACTAAGCTATGATGGAACAGATAGAATGGCACTTGCTGAGGCAGGGGCGATTCCGATTCTCATTGACCAGATGAATGATGTTGATGAGGTCGAGGAACTAAGGGATAATGCTGCCGAGGCTCTTGTCAATTTTCATGAAGATCCGTTATATCATGATAGAGTGTCTGATGCGATTAATGTTCCTTCATTCAGAAATATGCAGAATAGATTGATTCATATTCGTGCATCGAACGAGCATATGGCTAGATCCTTGAGAAGAATGAGCGTTGAGCAGCTCACTTGGAACCCAGATCTTGTATAA 1386 0.4618 MNPVDWEQELKKYEDVIASGTKCMKIKAMVMLARFSEHAPEHVLARTIPILTEILGHNVSNDSAPSLQEAAAYCLKCIACRGDGELAVEIGGHGATHSLMRLLPQSDGRMQKVLLKCLLIIVSFCSASRTVVATNGGVELIIGLLSSCTDDTRRYLLEILSVLALRRDVRKALTRLRALHYVVEAAGFGSMVSRERACQAIGLLGVTRQARRTLVELGAIPVLVALFRDGDHTTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGDDEAKASAADVMWDLSGYKHSTSVVRDSGAIPNLVELLRSGSEDVKVNVSGAFAQLSYDGTDRMALAEAGAIPILIDQMNDVDEVEELRDNAAEALVNFHEDPLYHDRVSDAINVPSFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00825 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Pumo1g00825 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Pumo1g00825 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 418 - -
Pumo1g00825 461 Gene3D - 248 430 IPR011989 -
Pumo1g00825 461 SUPERFAMILY ARM repeat 47 406 IPR016024 -
Pumo1g00825 461 Gene3D - 7 247 IPR011989 -
Pumo1g00825 461 SMART arm_5 125 165 IPR000225 GO:0005515
Pumo1g00825 461 SMART arm_5 207 247 IPR000225 GO:0005515
Pumo1g00825 461 SMART arm_5 366 408 IPR000225 GO:0005515
Pumo1g00825 461 SMART arm_5 325 365 IPR000225 GO:0005515
Pumo1g00825 461 SMART arm_5 248 288 IPR000225 GO:0005515
Pumo1g00825 461 SMART arm_5 35 80 IPR000225 GO:0005515
Pumo1g00825 461 Pfam Armadillo/beta-catenin-like repeat 329 364 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00825 211 406 U-box Gene Family AT3G46510 26.368 5.36e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00825 - - gmx:100819735 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00825 1 12562072 12564104 Pumo1g00825 1 12562072 12564104 ECH