LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00824	ATGAGGGAGGAGCTGGTCACACTTTATGATTTGGCTCTCAAAACAGTTGTTTGGGGTGCTGTTTGTGCTTATTTACATTCCAGAAACTCCGAGGCACAGGATCCGAGTTTGCCATGTTTGTTGAGAATTTGGTGCTGGGTCTATTCCTTTGTTTCTTGTTCTTGCCTTGTTATTGACTTTGTAGTCTATGGAAAGCATGTTTTCTTGCCAATTATATACCTTGTTTCTGATATAGGTTCGTCTATTACGGGTTTATTTCTATGTTATGTTGGATGTTCTCTTAACAATATGGCTAAGCTTGCCCCTCTTGAAGAGCCCCTTTTGAATGGTGACTCTAGTGTATGCAACAATTCTGATCCCAGTAAGACTAGAGGACATGACTATTTAACCCGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATCAGTCCATTAATAACCCTAGGCAATAAGAGGACATTAGAGCATGAGGACCTCCCACTTCTTGCTACTGATGACAGTGCCTATGGGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGCACTGATTTTATGGAACTTGCTTCAACAGACCAAAGCGCACTAGATATGTACATTGCAAATATATTATGGGCAATTACCCTCAATCTGGTTACTCTGTTTGGAAATATTGTTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTGTCATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCGGCAAGAGAATTGGCACGATTAGTTGGGACATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAGTGCTACTGCAATTGAATGGCTGAATTTCAGATTGGATTTTTTATCTACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAATGACTGCTCCTAGCATTGCGGGATTGGCTGTGACATATGGACTTGATCTAAATGCTGTACAAACTAAAGTAATCTGGTTTGTTTGCAATTTGGAGAACAAAATTATATCTGTTGAAAGAATGCTCCAATACACATCCCTCCCAAGTGAAGCTCCTCTTGTAATAAAAGACAGCAAACCAGATTATTCTTGGCCATCATTTGGAGAGGTTCATATCCGGGATTTACAGGCTACAGTGACATTTTCTTGGTTACAAGTTTATCCTCTTACGGAGAATGGAGAAAATTGGAGTATGGGCCAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCAATCCTTGATAGTGACATGGTTTTGTTTTTAAATCAAGGGTTGATCGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTAGCTCAACTAGTCGCAGAATACATGAGGAGGTCAAACTCTGGTTTTGGAAATTAA	1665	0.3874	MREELVTLYDLALKTVVWGAVCAYLHSRNSEAQDPSLPCLLRIWCWVYSFVSCSCLVIDFVVYGKHVFLPIIYLVSDIGSSITGLFLCYVGCSLNNMAKLAPLEEPLLNGDSSVCNNSDPSKTRGHDYLTRYSNAGFFSILTFSWISPLITLGNKRTLEHEDLPLLATDDSAYGVMREGRITQSGKYNDILKTGTDFMELASTDQSALDMYIANILWAITLNLVTLFGNIVVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDFLSTLTFAFCLVFLISFPNSMTAPSIAGLAVTYGLDLNAVQTKVIWFVCNLENKIISVERMLQYTSLPSEAPLVIKDSKPDYSWPSFGEVHIRDLQATVTFSWLQVYPLTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYMRRSNSGFGN	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00824	554	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	196	345	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pumo1g00824	554	SUPERFAMILY	ABC transporter transmembrane region	197	401	IPR036640	GO:0005524\|GO:0016020
	Pumo1g00824	554	Gene3D	-	418	544	IPR027417	-
	Pumo1g00824	554	FunFam	AGAP012735-PA	426	545	-	-
	Pumo1g00824	554	Pfam	ABC transporter transmembrane region	196	345	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pumo1g00824	554	Pfam	ABC transporter	421	473	IPR003439	GO:0005524
	Pumo1g00824	554	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	344	542	IPR003439	GO:0005524
	Pumo1g00824	554	Gene3D	ABC transporter type 1, transmembrane domain	183	400	IPR036640	GO:0005524\|GO:0016020
	Pumo1g00824	554	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	437	534	IPR027417	-
	Pumo1g00824	554	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	133	172	-	-
	Pumo1g00824	554	CDD	ABC_6TM_ABCC_D2	202	394	IPR044726	GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00824	Pumo-Chr1	12554429	12560559	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00824	440	541	Calmodulin-binding Proteins	AT2G36910	33.010	6.22e-13	70.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00824	-		K05666	gmx:106794105	409.453