Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00814 ATGTCTTCCTCCAAGAGAAGATCTTCCATTGAAGCACCCGATGATCGAAGAAAGAAAGCTCACATAATGAGAAAGAAGAAAGAAGAAGAAAGACATTGGGGCTACTCAACAAATTTGATGCTTTATGATGACCCATGGAAGATCAAGAAAGTGCTCACAAAGAGTGACCTTGGCAACTTGAGTAGACTCTTGCTCCCCAAAGAATTGATAGAGGACTTGGTGCTACGCGTGTTGAGCCCTGAATCCCAAAGACAGGCTAAGAATGAAAAAGGAACCAAAATTACCATTTGGGATGTGGACACCCAATCCATGCATTATATTGTCCTCAAGTTTTGGGCTTCTTCGAAAAGTTATGTTTTCATTGACAACTGGACCAAAGATTTTGTGAATAGAAGGACTTTGAAGATAGGAGATGAAATTGGATTTCACTGGGATTCATACAAAAATCGGTTTGATTTTTCCGTTCTTGTAGATTTAGATCGGCGATAG 489 0.3988 MSSSKRRSSIEAPDDRRKKAHIMRKKKEEERHWGYSTNLMLYDDPWKIKKVLTKSDLGNLSRLLLPKELIEDLVLRVLSPESQRQAKNEKGTKITIWDVDTQSMHYIVLKFWASSKSYVFIDNWTKDFVNRRTLKIGDEIGFHWDSYKNRFDFSVLVDLDRR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00814 162 MobiDBLite consensus disorder prediction 1 29 - -
Pumo1g00814 162 Gene3D - 45 155 IPR015300 -
Pumo1g00814 162 CDD B3_DNA 46 156 IPR003340 GO:0003677
Pumo1g00814 162 SUPERFAMILY DNA-binding pseudobarrel domain 44 151 IPR015300 -
Pumo1g00814 162 Pfam B3 DNA binding domain 50 150 IPR003340 GO:0003677
Pumo1g00814 162 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00814 Pumo-Chr1 12372986 12374018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00814 50 143 RAV Transcription Factor Family AT4G01500 32.979 4.16e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo1g00814 B3 4.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00814 - - gsj:114396848 257.684