Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00813 ATGGCTATCCAACAATCTCTGCTAGACAAGCCTAGAAAATCCATTTCCAAAACTATTTGGTTAATTCTCTTTGTGGCTGTTGCGTTAAGCGCATCAGTTCTTATTGCTTCTTATCTCATCAAACCCACCTCCTTCTTCAACCACTCTTCCCCTCACCACCATATTTGTGATTATGCACTTGATACTACATCCTGCTTAGTACATGTTTCAGAAGTGACTCAAGGTCTGAATATCTTGACCGTCACAAAAGACCATGAATTCAATTTGCTCCACTCTTTTCTAATGAAATCCATTTCACACATTGAGCGAGCTATGAACACGGCCAATTCCACATTACTTAAGATCAATAGTCGCAGGGAGGAAGTATCTTTGCACGACTGTGTGGAGCTGATGGACTTGTCCATGGACAGAATTCGGGACTCGATGATGGCTCTAACAAAAGAGACCACTGAGTCATTGCAAGATGCACACACATGGCTAAGCAGCGTGCTCACTAACCATGAAACTTGCTTGGATGGATTGGAGGGGCCACCGCGAGAACTTATGGAGGCTGAGCTTCATAACTTGATATCTAGAGCAACAACCTCTTTGGCCATGTTTGTTGCTGTTTTGCCTCCAAAGGTTGAAAATATAATCGATGAGGTGCTAAATGGGAACTTTCCCTCATGGGTGACGAACAGGGACCGAAGGCTTTTGGAGTCTACGGCTAAGGACATCAAGGCCAATGCTGTGGTGGATCAGGATGGGAGTGGCAACTTCAAAACCGTGGCTGAGGCTGTGGCATCTGCACCCAACAAAAACAGCAAAAGGTATGTTATCCATGTAAAAAAGGGAACGTACAAAGAGAATGTTGAAATTGGTAAAAACAAGATGAATGTGATGCTCGTGGGTGATGGTATGGATGCAACTATAATCACTGGCAACAAGTATAGCAATAACGAAACAAGCACCTTTAACTCTGCCACTGTTGCTGTGGGTGGTGATGGGTTTATAGCCCAGGACATTCAGTTCAAAAACACAGCAGGTGCAAAGAACCATCAGGCAGTGGCTCTCCGTGTTAGTGCCGACAAGTCCGCCATAAACCGCTGTAAAATCGATGCATTCCAAGATACTCTTTATGCCCACACCGGCAGGCAATTCTACCGTGATTCATTCATCACTGGCACCGTTGACTTCATCTTTGGAAATGCAGCTGCTGTGATCCAGAAGTGCAAGTTGGTTGCTCGAAGGCCCATGAGTAACCAAAAAAACATGGTCACAGCCCAAGGACGAACAGATCCAAACCAAAACACTGGAACTTCGATTCAACAATGTGACATAATACCAAGCACGGATCTTAAGCCTGTCATGGGCACCATTAAAACTTTTCTAGGTCGCCCATGGCATAATTTCTCCAGAACAGTTGTGATGCAATCCTTGATAAGCAACCATGTTGACCCAGCAGGATGGGCAGAATGGGATGACAAAAGTAAGAGCTTTTTGAAAACGTTGTACTATGGAGAGTACAAGAACCATGGACCAGGTTCTGATACTAGTAAGAGAGTGAATTGGCCTGGTTACCATATCATCAAAAGTGCATCAGAGGCCAGCAAGTTTACAGTAAAACAGTTCATCCAAGGTGATGAATGGTTGCCTAACACCGGGGTGAACTACAATGAGGGCCTCTAG 1668 0.446 MAIQQSLLDKPRKSISKTIWLILFVAVALSASVLIASYLIKPTSFFNHSSPHHHICDYALDTTSCLVHVSEVTQGLNILTVTKDHEFNLLHSFLMKSISHIERAMNTANSTLLKINSRREEVSLHDCVELMDLSMDRIRDSMMALTKETTESLQDAHTWLSSVLTNHETCLDGLEGPPRELMEAELHNLISRATTSLAMFVAVLPPKVENIIDEVLNGNFPSWVTNRDRRLLESTAKDIKANAVVDQDGSGNFKTVAEAVASAPNKNSKRYVIHVKKGTYKENVEIGKNKMNVMLVGDGMDATIITGNKYSNNETSTFNSATVAVGGDGFIAQDIQFKNTAGAKNHQAVALRVSADKSAINRCKIDAFQDTLYAHTGRQFYRDSFITGTVDFIFGNAAAVIQKCKLVARRPMSNQKNMVTAQGRTDPNQNTGTSIQQCDIIPSTDLKPVMGTIKTFLGRPWHNFSRTVVMQSLISNHVDPAGWAEWDDKSKSFLKTLYYGEYKNHGPGSDTSKRVNWPGYHIIKSASEASKFTVKQFIQGDEWLPNTGVNYNEGL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00813 555 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Pumo1g00813 555 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
Pumo1g00813 555 FunFam Pectinesterase 236 555 - -
Pumo1g00813 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 200 IPR035513 -
Pumo1g00813 555 SMART PMEI_2 47 199 IPR006501 GO:0004857
Pumo1g00813 555 ProSitePatterns Pectinesterase signature 1. 267 286 IPR018040 -
Pumo1g00813 555 PANTHER PECTINESTERASE 27 545 - -
Pumo1g00813 555 Pfam Plant invertase/pectin methylesterase inhibitor 82 198 IPR006501 GO:0004857
Pumo1g00813 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 203 IPR035513 -
Pumo1g00813 555 Gene3D - 236 555 IPR012334 -
Pumo1g00813 555 Pfam Pectinesterase 242 541 IPR000070 GO:0030599|GO:0042545
Pumo1g00813 555 CDD PMEI-like_4 60 203 - -
Pumo1g00813 555 NCBIfam pectinesterase inhibitor domain 89 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00813 Pumo-Chr1 12366282 12368373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00813 5 555 Carbohydrate Esterase AT1G11580 51.786 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00813 K01051 - gmx:100815836 816.994