Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00811 ATGGCTGTGAACAATCACTGTTTCGTGGAATGGAAAGAGCAGTTTGTTTCGCAGGAACGTGGTAATCGTGTGGTTCACTATTACCTGAAGGATGCTGCTGGGGAATCCATCCTTGCAGTGGTGGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTGTTGCTGAGGAGTTCCTTGAAATTTGTGGGAAAGAGGGCTCCATTCCAACTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAACGCTATCAAAGCAGAACCTGCAGGGAGATAGAAGTGTATCACCTGGTCATAACGTGGTACCAGCTCATGAGACCACAAATGACAGTGTCAATGAAATCACTGGTCTGTCTGCTCAAATAGCAGATGACAAGGAATTTCCAATGAGTAACTCTAAATTATCCAATTCAGACATTGTTTGGTCAGGAGTTGCGTGGAGATGTGGCAAACAACTTAAGCATTATCCTGCTTTTTGCAGGAATGGCATCAAAATAGCGATTCAATCCTTTGTGTTTGTTATGGGCAAGGGAGAGAATCATTATATTGCTTATGTAGACGATATGTATGAAGACAGGAGGGGACAGAAAAAGGTCAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAGTTCCTGTACGAAATCCTCACCCTCGGGAAGTTTTTATCACACCTCATTCTCAAGTCATTAGTGCAGAGTGCGTAGATGGTTCTGCCACAGTCTTAACTCGTGAACACTATGAAAAATGCATGGCTTTTTTTTCCCCCACTTCAAGGGACAGAATACATTTGTGCTTTAGGCAGTTTAGAAGCAACAAAGTCAAACCCTTTGACTTGAGTAAACTGCGTGGTTACTATGCTCAACCAATTCTTTCTTGCTTGCACCTTGATTCAATCCAGAACACTGAGAGCCTTGCAGGAGAAGATGAAGAGTTGAGTGCAGGTGATGATGCGAAGGTAGGAGCCAAGAGGAGCAGAGGTGATAAGGGGTCTCCTCAGTCTTGGATAAGTCGCCAGGGAGTTAGGAAGTTAATTAGAAGTAAGCAAATGATGGTATACAAAACCTTCCAGGTTGCAAATTATGCAAGACCAGAAAGGAGATTGCTTTCTCGGAAGCAGGTTGAGTGTCAACCTTGGTCTAACCACACATACAAGGTTGATGACAGGATAGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTTCAGGTAGCCCGGAAGCAGTTGAAAGTCCAATATGATGATGTCCAGGATGAAGATGGAAGTGGAAATCTTGAGGAATGGATCCCTGCTTTCAAGTTGGCCAGGCCTGATAAACTTGGGATGAGGCATTCTGGCCGCCCCACCATCAGGCCAGCTCCAACTTATGAGGAACACGAACTGGCTATCGAGGTTGGAAGTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAACTAGAATTGACAACTGTGGTGATGATAGTGTTCAAGTCTACCTTCCCGGTGAATGCTTGCTGATGAAAGTGTGCAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGGGACCGTTGGATTAACATTAAGGCAAAACCTGAAATAACTACAACTATATTCACAGCTAATAATAGTTTTAACACAAAGCTTTCTGTGTCACCATCTATCGCTAAAGATGCGGACTCTGTTGGTTTTGCTAATTCATGTCATGGTGATCCTGTTAGTAAGAAGTTTAATGAACCAGCCATCGAAGAAGAGAAATTTGTGTCTTGTGATGGCTCTGCTGAAGATGGGGACTGTGTCCAGGATAATAAACCCTCTTCAGAAAAAAGTACTCAAGCTGATAATATTGATACACATGGCAATTGTGATAATGAAGAGAATGGTGATGATAATGATAGCAAAGATGATGGTGGTAACAAGAATGGTGATGATAATGGTAATAAAGATATGGAGGTTTTTGAAACTTCTGGACCAGACCGAGAAACAGCAGAGCTCATGGAAATGGCTGTATAA 2046 0.4335 MAVNNHCFVEWKEQFVSQERGNRVVHYYLKDAAGESILAVVGTERSVRHMCYVVAEEFLEICGKEGSIPTGFKWRSRREVVDWLTSTLSKQNLQGDRSVSPGHNVVPAHETTNDSVNEITGLSAQIADDKEFPMSNSKLSNSDIVWSGVAWRCGKQLKHYPAFCRNGIKIAIQSFVFVMGKGENHYIAYVDDMYEDRRGQKKVKVRWFHHNQEVKGVVPVRNPHPREVFITPHSQVISAECVDGSATVLTREHYEKCMAFFSPTSRDRIHLCFRQFRSNKVKPFDLSKLRGYYAQPILSCLHLDSIQNTESLAGEDEELSAGDDAKVGAKRSRGDKGSPQSWISRQGVRKLIRSKQMMVYKTFQVANYARPERRLLSRKQVECQPWSNHTYKVDDRIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLARPDKLGMRHSGRPTIRPAPTYEEHELAIEVGSAVDAWWSDGWWEGVVTRIDNCGDDSVQVYLPGECLLMKVCKKDLRISRDWLGDRWINIKAKPEITTTIFTANNSFNTKLSVSPSIAKDADSVGFANSCHGDPVSKKFNEPAIEEEKFVSCDGSAEDGDCVQDNKPSSEKSTQADNIDTHGNCDNEENGDDNDSKDDGGNKNGDDNGNKDMEVFETSGPDRETAELMEMAV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00811 681 SMART BAH_4 168 287 IPR001025 GO:0003682
Pumo1g00811 681 MobiDBLite consensus disorder prediction 319 333 - -
Pumo1g00811 681 Gene3D - 136 289 IPR043151 -
Pumo1g00811 681 MobiDBLite consensus disorder prediction 630 672 - -
Pumo1g00811 681 SMART agenet_At_2 389 454 IPR014002 -
Pumo1g00811 681 SMART agenet_At_2 475 533 IPR014002 -
Pumo1g00811 681 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Pumo1g00811 681 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 383 618 - -
Pumo1g00811 681 MobiDBLite consensus disorder prediction 615 629 - -
Pumo1g00811 681 MobiDBLite consensus disorder prediction 314 341 - -
Pumo1g00811 681 MobiDBLite consensus disorder prediction 609 681 - -
Pumo1g00811 681 Pfam Agenet domain 395 468 IPR008395 -
Pumo1g00811 681 Pfam BAH domain 171 272 IPR001025 GO:0003682
Pumo1g00811 681 CDD Tudor_Agenet_AtDUF_rpt1_3 391 451 - -
Pumo1g00811 681 CDD BAH_plant_1 163 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00811 Pumo-Chr1 12347057 12353631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00811 403 531 PHD Transcription Factor Family AT5G58610 29.323 3.55e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00811 - - gmx:100306240 1232.62