Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00781 ATGGCGGACTCCGACAACGACTCTGGCGGCGCGCACAACGCCGGAAAGGGCAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCTCTCCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAAAAACGCAAGACGATCAACGGCGACGATCTGCTCTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTGGAGCCTCTCAAGGTGTACCTCCAGCGCTTCAGAGAAATGGAAGGAGAGAAGAGCGTGGCGGCGCGTGACAAAGACGCGCCTCCTGCTACCAATGCTACCAACAGTGCCTACGAGAGTGGTAGTTATGGTGCTGGTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTGGCGGGTTCCATCAAGTGGCTGGCGCTGCTGCTGCTATTAAGGGTGGGCCAGCTTATCCCGGGCCTGGATCCAATGCCGGTAGGCCCAGATAG 567 0.6049 MADSDNDSGGAHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDKDAPPATNATNSAYESGSYGAGGIMMHQGHVYGSGGFHQVAGAAAAIKGGPAYPGPGSNAGRPR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00781 188 MobiDBLite consensus disorder prediction 1 26 - -
Pumo1g00781 188 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo1g00781 188 Gene3D Histone, subunit A 16 141 IPR009072 GO:0046982
Pumo1g00781 188 SUPERFAMILY Histone-fold 25 130 IPR009072 GO:0046982
Pumo1g00781 188 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Pumo1g00781 188 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Pumo1g00781 188 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Pumo1g00781 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo1g00781 188 FunFam Nuclear transcription factor Y subunit B-3 17 141 - -
Pumo1g00781 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00781 Pumo-Chr1 11594701 11596223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00781 1 156 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.069 1.17e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo1g00781 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00781 K08065 - gmx:100813580 341.658