Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00777 ATGGGAACCTATGTGGAAAATTTTGCAAGTGAGGAGGAACATGTCTTTCGTAGCCAATACTCACCTGTCCCTGTCCCTGACAATGTGACATTGCCGGAATTCGTGCTCCAAAATGCTGAATTGTATGCTGACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGGTCACTTATAGTGAGGTGGTGAGGGGTGTACACAGGAAAGGGCATGTTGTGATTGTAGTGCTTCCAAATGTGGTAGAGTATGCCATTGTTGCTTTGGGGATAATGGCCGCTGGTGGGGTGTTCTCAGGGGCAAATCCAACATCACATGTATCAGAAATTAAGAAACAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATGTCACAAACTATGAAAAGGTGAAGGGTCTGGAGCTACCTATTATTGTGCTGGGAGATGAAGTTGTTGAAGGTGATGATTTGACAAGGGAGCCTATTCAGCAGAATGATCTCTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTAGTGGCTAATCTTTGCTCTTCACTCTTTGGTGTGACCCGAGAAATGGAGGGTCTGGTCACCACACTAGGCTTGATTCCCTTCTTTCACATTTATGGCATCACTGGAATATGCTGTGCCACTCTTAAGAGCAAAGGCAAAGTTGTGGTTATGGGAAGGTTTGAGTTGAAAACGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCCATTGTGCCCCCTATCATTCTAAGTTTGGTGAAAAATCCAATAGTGGATGAATTTGACCTCAGCAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCTCCACTTGCACCAGAACTCCTTAATGCTTTTGAACATAAGTTCCCTGGTGTTGCTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACTTATGCACAAAAAGGATTGGGAAGTACTCATAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTCCCAAGGAACACACCTGGGGAACTCTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAAGAGGATGAGACTGCCCAGACCATTGATAAGAATGGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTATTTATCATTGATCGTATCAAGGAGTTGATTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGTCCAGGTGCAAAAGAGAGCGAGGAGGACATCATGAACTATGTTGCCTCCAATGCTGCACATTACAAGAAAGTGCGAGTGGTGCACTTTGTGGAAGCCATACCAAAGTCACCCTCTGGGAAAATAATGAGGAGGCTTATCAAAGAGAAGATGGTTGGCTGGCAAGTTATTGAAATGAAGAATAAGAATGAAAAACTTAAATTTGAGAAGTTTACATGGAAGATTGAGAACTTCTCTAAATTGGACTGCAAGAAACTGTACTCCGAGAAGTTTTTGCTTGATCACCATACATGGCGGATTCTTGTATATCCAAAGGGGGCTGATGCGGGCTACTTGTCAATTTATTTAGATGCTGGTGTTGTTAATTTGCCTTTTGGCTGGAGCAAATTTGCAAATTTCAAGTTCGCTTTAATTAATCAGGTCAATGGCAAAATGACTAAAATAAAAGAAACTACAAAAAAGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACCCTTAGATGAACTTCGTGACTCTAGCAGCGGGTTTATTGTGAATGATACTTGTATAATTGAAGTTCAGATTTTGGTCAGCAAGTCAGAGCAGGAGAATCAAGTTGATGATCAACCCGTTAGCAAGATTGATAACACTGATAATTTCTTACCCAAGGAAACGTTCACAACCTCATTTGGAGAAGTATGTTCTCAACATCCCTCACTCATTGACAGTCAGCAGAAAAGAAGTGGTAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTCTAGATTTTCTCAAGACTAAAAAGGTGAAAGATATGGATGGTGATGCCTGCAATCATCTTCAAATTTTATGGGAGGAACTGAAGATGTTTAGATTTGATTTGACATGGCTGGAACCTCATGTTCAATCTGCCTTGAGTATGAAAACCTGTATTGAGAGATCTGTTCAGCTGAAAAGGATGGGGGAGGACGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTGAAGCAGAGGTAAACCTTGAAATAGCAAGAAGAGACTGGATGAAAGCAAAAGAAGGCTTTGAAGAGTGTGATTTGGATGCTGAACTAGGATATGGAGGACCATAA 2502 0.4217 MGTYVENFASEEEHVFRSQYSPVPVPDNVTLPEFVLQNAELYADKVAFVDAVTGKGVTYSEVVRGVHRKGHVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESADAKLIVTNVTNYEKVKGLELPIIVLGDEVVEGDDLTREPIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSSLFGVTREMEGLVTTLGLIPFFHIYGITGICCATLKSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILSLVKNPIVDEFDLSKLKLQAIMTAAAPLAPELLNAFEHKFPGVAVQEAYGLTEHSCITLTYAQKGLGSTHKNSVGFILPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQEDETAQTIDKNGWLHTGDIGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSPGAKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKEKMVGWQVIEMKNKNEKLKFEKFTWKIENFSKLDCKKLYSEKFLLDHHTWRILVYPKGADAGYLSIYLDAGVVNLPFGWSKFANFKFALINQVNGKMTKIKETTKKFNATEIAWGFPKFIPLDELRDSSSGFIVNDTCIIEVQILVSKSEQENQVDDQPVSKIDNTDNFLPKETFTTSFGEVCSQHPSLIDSQQKRSGRFVEWAFTALGRVLDFLKTKKVKDMDGDACNHLQILWEELKMFRFDLTWLEPHVQSALSMKTCIERSVQLKRMGEDVTALEMETKRLKAKMIEAEVNLEIARRDWMKAKEGFEECDLDAELGYGGP 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00777 833 SUPERFAMILY Acetyl-CoA synthetase-like 17 514 - -
Pumo1g00777 833 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 413 - -
Pumo1g00777 833 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 511 - -
Pumo1g00777 833 Pfam AMP-binding enzyme 65 418 IPR000873 -
Pumo1g00777 833 ProSitePatterns Putative AMP-binding domain signature. 164 175 IPR020845 -
Pumo1g00777 833 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Pumo1g00777 833 Gene3D - 13 413 IPR042099 -
Pumo1g00777 833 CDD MATH 531 653 IPR002083 GO:0005515
Pumo1g00777 833 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 528 670 IPR008974 GO:0005515
Pumo1g00777 833 Pfam MATH domain 536 654 IPR002083 GO:0005515
Pumo1g00777 833 FunFam 4-coumarate--CoA ligase 2 414 514 - -
Pumo1g00777 833 ProSiteProfiles MATH/TRAF domain profile. 529 653 IPR002083 GO:0005515
Pumo1g00777 833 SMART math_3 531 634 IPR002083 GO:0005515
Pumo1g00777 833 SUPERFAMILY TRAF domain-like 531 657 - -
Pumo1g00777 833 CDD 4CL 25 506 - -
Pumo1g00777 833 Gene3D - 414 514 IPR045851 -
Pumo1g00777 833 Coils Coil 777 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00777 Pumo-Chr1 11532144 11542781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00777 11 513 Monolignol Biosynthesis Gene Families AT1G62940 70.189 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00777 K01904 - gmx:100811418 963.755