Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00749 ATGGCTTCATTTCCTTCAAATTCTGCATTAGAACATAGCATGGCCAGTGCACAAAACAGCCACCCTCATGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACCTTCTTGAGGAGAGTATTCCATTACCAAAATGGACCGAGATCTGATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTGTTTGCTTTGTTGGTCCAGATAACAAGTACCACATTCATTTTAGCCATTTCAAAGAGTGAGAAGCCAATTTGGCCTATGAGGGTGTGGATAGCAGGTTATGATATTGGCTGTGTCCTTAATCTTCTGTTACTTTGTGGTCGCTACTATCAACTTCATGTGACTCAAGGGAATGCTCTTAGCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGAGCTCACATTTGATAGAGAAATGCCGTAGTTCACTAGAACTTTTCTTTGCGATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGATCATTCCAACAAGCTCCAAGGCTCCAAGTGCTCTGCATCATCCTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTACTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGGTTCACAACAACTTGGACCTTGGCAATGACTCTCAAAGCAGTGAAAGATTGATCAATGATGATCCAGAATGTTGCATTTGCTTGGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCCTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGCAAACAAGGATTACAGAGGTAG 984 0.4299 MASFPSNSALEHSMASAQNSHPHASSPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELFALLVQITSTTFILAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYYQLHVTQGNALSLSELEQQRNNEESSVYRSSHLIEKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPRLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRYKGVHNNLDLGNDSQSSERLINDDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00749 327 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 325 - -
Pumo1g00749 327 SUPERFAMILY RING/U-box 272 325 - -
Pumo1g00749 327 SMART ring_2 281 321 IPR001841 -
Pumo1g00749 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 326 IPR013083 -
Pumo1g00749 327 Pfam RING-like zinc finger 280 308 IPR001841 -
Pumo1g00749 327 ProSiteProfiles Zinc finger RING-type profile. 281 322 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00749 Pumo-Chr1 11289110 11293252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00749 29 325 C3H Transcription Factor Family AT4G26580 68.013 2.03e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00749 - - gmx:100818715 635.565