Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00740 ATGGACATGAGCAGCAATCATCTTTCTGGGGAGATTCCTCCAAGACTATCGGGATGCCAGAATCTTGAGTTTCTAGACCTTCATTCCAACAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCCAAAAGCCTTCAGTTGATTGACTTGTCAGACAACAGGCTAACAGGTGCATTGAGTCACACCATTGGTTCATTGGTTGAGTTAACCAAACTCAACCTTGGAAACAATCAGCTAAGTGGAAGAATCCCAGCAGAGATCTTGTCTTGCACCAAGCTACAACTTCTGGACTTGGGAAGCAATAGTTTCAATGGAGAAATTCCCAATGAAGTTGGTCTAATTCCTTCACTGGCAATCTCTCTCAACCTTAGCTTCAACCAGTTTTCTGGTAAAATTCCTTCCCAGTTCTCTAGTCTTACCAAACTAGGAGTTCTTGATCTCTCACACAACAAGCTCTCAGGGAATTTAGATGCTCTTTCTGACCTTGAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGGCCTCTCTGGTCAGTTGCCTAACACCCCATTCTTCCACAAACTCCCTCTTAGTGACCTTGCTGAAAATCAAGGTCTCTACATTGCTGGAGGTGTTGTAACTCCTGGTGACAAAGGTCATGCTAGATCAGCCATGAAGTTCATCATGTCCATTCTCTTAAGCACCAGTGCAGTACTAGTGCTGCTAACAATCTATGTCTTAGTCAGAACTCATTTGGCCAGCAAGGTGCTCATGGAAAATGAAACTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTGAATTTGACATCAGCCTATGTGATTGGCACTGGAAGCTCAGGAGTTGTGTACAAGGTGACAATTCCAAATGGTGAAACACTGGCAGTTAAGAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACATTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTGGGGTGGGGATCAAACAAGAACCTGAAGCTGCTGTTTTATGACTACCTCCCTAATGGAAGCTTGAGCTCATTGCTTCATGGGTCAGGAAAGGGTAAAGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCACATGCACTTGCATATTTGCACCATGATTGTTTGCCTGCTATTATTCATGGAGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGATACCAACCTTACCTTGCTGACTTTGGCCTGGCTAGAACTGCAACTGAAAATGGTGACGATACTAATTCCAAGCCACTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCACTGCAGCCTATCACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGTCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGCTGAGAGGGAGAGCTGATCCCACCATGCATGAAATGCTTCAAACTCTAGCAGTGTCCTTTCTATGTGTAAGCACTAGAGCTGATGATAGGCCAACAATGAAGGATGTTGTTGCAATGCTCAAGGAAATTAAACCCCTTGAGACCTCAAGGGCAGACCCTGATGTATTGAAGGGAGGTTTAACAGCACATAGCTCACCACCACCTCCTAAGAATGTGGTCTCACATGGATCTTCTACATGTTCCTACAATTTCTCGGATAACTCAATCAGTTGA 1800 0.4389 MDMSSNHLSGEIPPRLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLTGALSHTIGSLVELTKLNLGNNQLSGRIPAEILSCTKLQLLDLGSNSFNGEIPNEVGLIPSLAISLNLSFNQFSGKIPSQFSSLTKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGLSGQLPNTPFFHKLPLSDLAENQGLYIAGGVVTPGDKGHARSAMKFIMSILLSTSAVLVLLTIYVLVRTHLASKVLMENETWEMTLYQKLDFSIDDIVLNLTSAYVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKAMNVLLGPGYQPYLADFGLARTATENGDDTNSKPLQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLSSKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRADDRPTMKDVVAMLKEIKPLETSRADPDVLKGGLTAHSSPPPPKNVVSHGSSTCSYNFSDNSIS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00740 599 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 348 566 - -
Pumo1g00740 599 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 243 347 - -
Pumo1g00740 599 ProSitePatterns Protein kinases ATP-binding region signature. 280 303 IPR017441 GO:0005524
Pumo1g00740 599 Gene3D Ribonuclease Inhibitor 1 203 IPR032675 -
Pumo1g00740 599 SUPERFAMILY L domain-like 2 188 - -
Pumo1g00740 599 Pfam Leucine rich repeat 43 101 IPR001611 GO:0005515
Pumo1g00740 599 Pfam Leucine rich repeat 119 174 IPR001611 GO:0005515
Pumo1g00740 599 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 39 118 - -
Pumo1g00740 599 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Pumo1g00740 599 PANTHER LEUCINE RICH REPEAT KINASE 2 1 556 - -
Pumo1g00740 599 SMART serkin_6 274 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00740 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Pumo1g00740 599 FunFam Putative LRR receptor-like serine/threonine-protein kinase 119 204 - -
Pumo1g00740 599 SUPERFAMILY Protein kinase-like (PK-like) 273 549 IPR011009 -
Pumo1g00740 599 MobiDBLite consensus disorder prediction 559 587 - -
Pumo1g00740 599 Gene3D Phosphorylase Kinase; domain 1 240 347 - -
Pumo1g00740 599 Gene3D Transferase(Phosphotransferase) domain 1 348 564 - -
Pumo1g00740 599 ProSiteProfiles Protein kinase domain profile. 274 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00740 599 Pfam Protein kinase domain 279 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00740 599 PRINTS Leucine-rich repeat signature 138 151 - -
Pumo1g00740 599 PRINTS Leucine-rich repeat signature 44 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00740 Pumo-Chr1 11227204 11229368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00740 1 598 Receptor kinase-like Gene Family AT5G56040 68.257 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo1g00740 Pkinase 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00740 - - gmx:100792943 1136.71