Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00738 ATGGATGCTAAGTCAGCTGTAGAATTAATGGAGTCTTCCTCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACCGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACAGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTTTGTGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGATGTGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGACACTACCGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTTTGTAAAATATATCCGAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCCAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGAGAAGGTGACAATGGTCAGCAACTGATATACGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCCTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATCGGTTTGAATGAAGATTTCCGTGTCATACCAGGCATGGGTGAGTTTGGAGATCGGTACTTTGGAACAGACGATGATGATGAGCACGTGGTAGTTTCTTCCCAGTAG 1434 0.3968 MDAKSAVELMESSSEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTEQLLCVMDKLKHGEAVDIPKYDFKSYKSDDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEHVVVSSQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00738 477 NCBIfam uridine kinase 46 246 IPR000764 -
Pumo1g00738 477 FunFam Uridine kinase 250 465 - -
Pumo1g00738 477 PANTHER URIDINE KINASE 35 375 - -
Pumo1g00738 477 FunFam Uridine kinase 44 249 - -
Pumo1g00738 477 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Pumo1g00738 477 Gene3D - 43 249 IPR027417 -
Pumo1g00738 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 239 IPR027417 -
Pumo1g00738 477 PRINTS Uridine kinase signature 77 88 - -
Pumo1g00738 477 PRINTS Uridine kinase signature 214 227 - -
Pumo1g00738 477 PRINTS Uridine kinase signature 47 64 - -
Pumo1g00738 477 PRINTS Uridine kinase signature 122 137 - -
Pumo1g00738 477 PRINTS Uridine kinase signature 178 188 - -
Pumo1g00738 477 PRINTS Uridine kinase signature 192 203 - -
Pumo1g00738 477 CDD PRTases_typeI 323 438 IPR000836 -
Pumo1g00738 477 Pfam Uracil phosphoribosyltransferase 264 465 - -
Pumo1g00738 477 Gene3D - 250 465 IPR029057 -
Pumo1g00738 477 Pfam Phosphoribulokinase / Uridine kinase family 49 234 IPR006083 GO:0005524|GO:0016301
Pumo1g00738 477 CDD UMPK 49 246 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00738 Pumo-Chr1 11168419 11177031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00738 1 468 PRT Gene Family AT4G26510 84.043 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00738 K00876 - gmx:100792258 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00738 1 11168419 11177031 Pumo9g01762 9 46746945 46754755 PCT