Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00730 ATGAAGATCACTGTCATGACTGCTGATGAGCAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAAGGAGGTGAGAAATTCTGAGAAGTTGAGTGCCCTTAGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGCTGGAGCTGGCGCTGCTGCTGCTTCTAGTGGGTCTACCAATGATTTGAGCCTAAATGCTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGATGCGATTCTAATTTGACGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGTAG 408 0.4608 MKITVMTADEQIITLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVRNSEKLSALSVKDDDLLMMVSGAGAGAAAASSGSTNDLSLNADGSAVNPGAFQQHIRCDSNLTGQLFQSDPELAQAILGNDLNRL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00730 135 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pumo1g00730 135 SMART ubq_7 1 72 IPR000626 GO:0005515
Pumo1g00730 135 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Pumo1g00730 135 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Pumo1g00730 135 Gene3D - 1 86 - -
Pumo1g00730 135 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 134 - -
Pumo1g00730 135 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Pumo1g00730 135 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pumo1g00730 135 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00730 Pumo-Chr1 11097658 11099456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00730 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 31.169 4.14e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00730 K11885 - gmx:100779464 229.565