Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00724 ATGAAGATCACTGTCATGACTGCTGATGAGCAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAAGGAGGTGAGAAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGCTGGAGCTGGCGCTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCCTAAATGCTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACCTTAGACGCGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAGGAAATTTTGCGATTGCGTCATCACCAAAGAGATGAATTGAAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAATCTACCATTATCTCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATCGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCAACTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAGTTACATCAGGGAGCAATAATCCATCAACAGGAGGACACTCTTCTGGAGGAGCTTCTGGTGACAGGTCTAAGGTATGCTTTTGA 1119 0.4388 MKITVMTADEQIITLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGAGAAAASSGSTNDLSLNADGSAVNPGAFQQHLRRDSNLMGQLFQSDPELAQAILGNDLNRLQEILRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPTRFLDEEKYAKEASGSGGQVTSGSNNPSTGGHSSGGASGDRSKVCF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00724 372 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pumo1g00724 372 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pumo1g00724 372 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Pumo1g00724 372 CDD RP_DDI 187 310 IPR019103 GO:0004190|GO:0006508
Pumo1g00724 372 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pumo1g00724 372 Gene3D Acid Proteases 181 327 IPR021109 -
Pumo1g00724 372 SUPERFAMILY Acid proteases 188 303 IPR021109 -
Pumo1g00724 372 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Pumo1g00724 372 Coils Coil 135 155 - -
Pumo1g00724 372 MobiDBLite consensus disorder prediction 338 372 - -
Pumo1g00724 372 Pfam Aspartyl protease 180 302 IPR019103 GO:0004190|GO:0006508
Pumo1g00724 372 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Pumo1g00724 372 MobiDBLite consensus disorder prediction 341 362 - -
Pumo1g00724 372 FunFam DNA damage inducible 1 homolog 2 180 327 - -
Pumo1g00724 372 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 347 - -
Pumo1g00724 372 Gene3D - 1 85 - -
Pumo1g00724 372 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00724 Pumo-Chr1 11062608 11068795 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00724 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 31.169 4.22e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00724 K11885 - gmx:100779464 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00724 1 11062608 11068795 Pumo1g00724 1 11062608 11068795 ECH