Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00710 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGCAGTGTATATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAACGCCCTAATGGTGATTCTGAATCCAATGAAGAAGACCAGTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGCAGCCTGCTGCTCCTAATGAAACAGGAAATTACGGGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTGCACCGTCCATGCGTGAGGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAATTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTGTATGTGAATGCCAAGCAGTACCCAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAGTCTCGGCACCAGCATGCTATGAGAAGGGCAAGGAGTACCGGAGGACGATTTGCAAAGAAAACTGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAACAGCATCAAAAGTGCACAACAGGTTCGAAGCACCCGGTTATCAAAATGGTAGTGGATCCTACCATAATCCATAA 930 0.4624 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPMAQTMAGANASNSSSLERPNGDSESNEEDQSLSNSGMNEEDDDATKDSQPAAPNETGNYGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYPGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARSTGGRFAKKTDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDATASKVHNRFEAPGYQNGSGSYHNP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00710 309 MobiDBLite consensus disorder prediction 1 20 - -
Pumo1g00710 309 Gene3D - 174 236 - -
Pumo1g00710 309 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Pumo1g00710 309 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Pumo1g00710 309 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Pumo1g00710 309 MobiDBLite consensus disorder prediction 209 228 - -
Pumo1g00710 309 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Pumo1g00710 309 MobiDBLite consensus disorder prediction 1 117 - -
Pumo1g00710 309 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Pumo1g00710 309 MobiDBLite consensus disorder prediction 85 117 - -
Pumo1g00710 309 MobiDBLite consensus disorder prediction 40 69 - -
Pumo1g00710 309 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 288 IPR001289 GO:0003700|GO:0006355
Pumo1g00710 309 MobiDBLite consensus disorder prediction 207 309 - -
Pumo1g00710 309 MobiDBLite consensus disorder prediction 246 289 - -
Pumo1g00710 309 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00710 Pumo-Chr1 10927441 10931856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00710 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.383 4.91e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo1g00710 CBFB_NFYA 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00710 K08064 - gmx:100808378 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00710 1 10927441 10931856 Pumo1g00710 1 10927441 10931856 ECH
Pumo1g00710 1 10927441 10931856 Pumo9g01745 9 46624581 46628589 PCT