Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00687 ATGTCGTATTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCACCATACAAGCGATACAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGTCAAGATCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTTACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAACATTTTGCTGCTGAGGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGATTTGGCTTTGTGACAATGGAGACTGTTGAGGTGGCTGATCAATGTGTAAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGTATACTTTTCGAGCAATGCCCTATTTTGTGGGGACTGGATTCTTATTAGCTTTGAATTTTTTTTGTTCAACTCCAATGCATGGAAATTTTATGGGTGA 468 0.4274 MSYSRRSRYSPSPSPYKRYSRSVSRSLSRSRSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEVADQCVKYLNRSVLEGRVITVEKVYFSSNALFCGDWILISFEFFLFNSNAWKFYG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00687 155 SMART rrm1_1 49 122 IPR000504 GO:0003723
Pumo1g00687 155 Gene3D - 2 129 IPR012677 -
Pumo1g00687 155 MobiDBLite consensus disorder prediction 1 49 - -
Pumo1g00687 155 MobiDBLite consensus disorder prediction 1 27 - -
Pumo1g00687 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Pumo1g00687 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Pumo1g00687 155 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 36 123 - -
Pumo1g00687 155 CDD RRM_SF 50 122 - -
Pumo1g00687 155 SUPERFAMILY RNA-binding domain, RBD 15 123 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00687 Pumo-Chr1 10466801 10467870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00687 37 127 Eukaryotic Initiation Factors Gene Family AT1G49760 32.609 3.75e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00687 - - gmx:100805126 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00687 1 10466801 10467870 Pumo1g00687 1 10466801 10467870 ECH