Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00684 ATGAATGAGCAAAATGGGTTCCTTGTTCATTATTTAAAGGCTATCGAAGATGAGTTGATGGAGGACGACCACCACCACCAAGACATGCAGCCGGATGACAATGACGTCGAAAGCTACATTCAGTTCTTGAAGGACCCGGACCCCAAGAGTCGTATACGTTGGACTATAGAAGAACACAGGTCATGTCTCCTTGGCCTTCATACACATGGTGCAGGAAAGTGGAAAGACATTTCAAAAGATTTTGTTCCTACTAAAACTCCTATTCAAATTGGTAGTCATGCCCAAAAATATTTCAAAGGAAATGAAACACCAAAGGAAGAGAGGAAAAGAAAAAGCATCCATGACACAGACATTGTTTCTCCCAACGTTGATCAACAAAACTCGTTTCATACTCCTACTCCAAATTTTGCTATGCAACACCCACCACAAGATATGTTGCAGTTCAACCTCCAAAGCAATATGGGTGCTTCCTACTCTGAGCAGAAGCAGAATTGGGTTCATGCAATGCAAGCCCAAGATACGTTGCAATTCAATTCTACTCTAGATTTTGCTATGCAGCAATATGGGTGGATATGA 576 0.4167 MNEQNGFLVHYLKAIEDELMEDDHHHQDMQPDDNDVESYIQFLKDPDPKSRIRWTIEEHRSCLLGLHTHGAGKWKDISKDFVPTKTPIQIGSHAQKYFKGNETPKEERKRKSIHDTDIVSPNVDQQNSFHTPTPNFAMQHPPQDMLQFNLQSNMGASYSEQKQNWVHAMQAQDTLQFNSTLDFAMQQYGWI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00684 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 102 IPR017930 -
Pumo1g00684 191 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 46 167 IPR043363 -
Pumo1g00684 191 Pfam Myb-like DNA-binding domain 53 98 IPR001005 -
Pumo1g00684 191 MobiDBLite consensus disorder prediction 98 125 - -
Pumo1g00684 191 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 99 IPR006447 GO:0003677
Pumo1g00684 191 MobiDBLite consensus disorder prediction 99 117 - -
Pumo1g00684 191 SUPERFAMILY Homeodomain-like 49 99 IPR009057 -
Pumo1g00684 191 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Pumo1g00684 191 CDD SANT 53 98 IPR001005 -
Pumo1g00684 191 Gene3D - 53 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00684 Pumo-Chr1 10446547 10447290 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g00684 Myb_DNA-binding 4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00684 - - gmx:102659784 98.9821