Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00677 ATGAAGGGCATAGGAGGTGGAGGTGGTGCCATTATTCCACTTCATGGATGTGGAAATATAAGGGTCACTACTACTAACCCTTCTATGTGTTCAGTTGGTCCTCCTTTGACAGCCATAGATAGGTTTTTGTGGGGACAACAAAGCCACTTCGCTCAACATAAGCAGCAACAACAGCCACAGAACGTTGCAAACAATAGCCATGCAAGTGTTTTTGATTGTGGTTCAACCTACAACTTTCTGTGGCCTAATAATAGTACTCAACAAGAAGTGAGCTTTGTTGAACAGATTTTAGCAAATGAAGAGGCTCTGAATTGGACACAACAAGTGCCAGCACTGTGCTTCAAAGAAGATGGGAAGAATGCCAAAGTGGTGAGACGAAGACCTAAGAAAGGGTCTTCTGTGCCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGTTGAAGTTGGTGGAGCAACATGGTGTAAGAAAATGGTCTCTGATAGCTGAGAAGTTGGATGGAAGGGCTGGAAAGCAGTGTCGAGAAAGATGGCATAATCATCTGCGGCCTGATATTAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAGAAACTCATGCCAAGATTGGAAACCGTTGGGCAGAGATTGCAAAGCGCATTCCAGGAAGAACAGAAAATACAATAAAGAACCATTGGAATGCAACCAAAAGGAGGCAAAATTTAAGGAGAAAGAACAAAAGAGCAGGAACCTCAAATGGAAAGCCACAATCTTCAATTCTCCAAGACTATATCAGAAGTTTGACTCTCACCAACACTACAACCACCACCACTCCCTCTGTGGAACAAATAATAGCACCTCAACAACACCTTGCTTTACCTCAACTCTCTGATTCTGTCACCAATGAAAATTCCTCATTAATGGCTGAGTCCTATGATGATGAGATGCTCTTCATGCAACAGCTTTTCAAGGGGAATGCCAATGTTGAATCTGCTAAGCACTCCAAGAATATTAGTAACTCTTCAGCCTCCTTGGATTGTTATCATCAAACAAACAATAATGTTGGTCAGCTTCTCACTGATGTCACACAATGTGGGTTTGTTGATCATTCCAACCCTAACACAAACTCACATAACAACATGTGCTTGGATGAGAGTCTCTTCATCTCTAGAAAGAGTGCTCCCACTGCTATCAACTACCTTGATTCTGATGTCTATCTCTCTCACTTGCTCAATGGAACTGCTGGTTCATCATTTTGCTATAATAATTATGGGGTGCACAACCAGAACATGGAGTTGCAGGTGGGGAATCATGATTGTTTTGAAGGAAAGAGGGAGATGGCTATGGTAGAGTTGGTTTGTTCTACTCAGTTTTTGCACCAGCAAGAAGAATCTGGACTTAGAATGTTTTAG 1407 0.4208 MKGIGGGGGAIIPLHGCGNIRVTTTNPSMCSVGPPLTAIDRFLWGQQSHFAQHKQQQQPQNVANNSHASVFDCGSTYNFLWPNNSTQQEVSFVEQILANEEALNWTQQVPALCFKEDGKNAKVVRRRPKKGSSVPLIKGQWTDEEDRKLLKLVEQHGVRKWSLIAEKLDGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKIGNRWAEIAKRIPGRTENTIKNHWNATKRRQNLRRKNKRAGTSNGKPQSSILQDYIRSLTLTNTTTTTTPSVEQIIAPQQHLALPQLSDSVTNENSSLMAESYDDEMLFMQQLFKGNANVESAKHSKNISNSSASLDCYHQTNNNVGQLLTDVTQCGFVDHSNPNTNSHNNMCLDESLFISRKSAPTAINYLDSDVYLSHLLNGTAGSSFCYNNYGVHNQNMELQVGNHDCFEGKREMAMVELVCSTQFLHQQEESGLRMF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00677 468 SMART sant 137 186 IPR001005 -
Pumo1g00677 468 SMART sant 189 237 IPR001005 -
Pumo1g00677 468 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Pumo1g00677 468 PANTHER MYB PROTEIN-RELATED 128 296 - -
Pumo1g00677 468 MobiDBLite consensus disorder prediction 236 256 - -
Pumo1g00677 468 Gene3D - 192 253 - -
Pumo1g00677 468 ProSiteProfiles Myb-like domain profile. 138 184 IPR001005 -
Pumo1g00677 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 239 IPR017930 -
Pumo1g00677 468 SUPERFAMILY Homeodomain-like 135 231 IPR009057 -
Pumo1g00677 468 Gene3D - 137 189 - -
Pumo1g00677 468 CDD SANT 193 235 IPR001005 -
Pumo1g00677 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 188 IPR017930 -
Pumo1g00677 468 FunFam Transcriptional activator Myb isoform A 137 190 - -
Pumo1g00677 468 Pfam Myb-like DNA-binding domain 141 198 - -
Pumo1g00677 468 CDD SANT 141 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00677 Pumo-Chr1 10269282 10271777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00677 32 454 MYB Transcription Factor Family AT5G58850 39.177 3.98e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00677 Myb_DNA-bind_6 3.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00677 K09422 - gmx:100786295 646.736