Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00675 ATGGCATCCATTGCCACCGTCTTCAACAAGTTCCTCTATCTCCTCATCCTCTTAGTCCACCTCGGCTGCTTCATCTTCACCACCGCCACCACCACCGCCGCCGGGAAAGAATCACCACCATCAAAGAAACGCAAAATCTCACCTTTATCCCAACCCTCCTCCCCTTCCCACTCCAAATTCAAAACCCACAAAGCCCTCTCCTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAGTCCTGCAAAACCCCCACCACCGCCACCGCCCAATCCTCTCCTCAATCCACCGCCACCACAACCACCACCACCACCGTCTCCGCAGCAGCAGCAGCAGCACATTCCCTCATTTCCTTAACACAACCCGACCCGGACAGAAAACAACCCGTTTCGTGCCCCGAATCCGACATCTCCACCGATACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCCTCGAAACCCACCAAACCCTCAAGCACGCGGTTTCGGATCTACCCGGATCCGACCCGGGTCACAACATCGTCCAAATCATCTTCAAATCGGGTTGGCCCGAATCCAAACCCTTCCCCACCATAACCCGCATCCTCAAAATCCACAACAGCCCCAAGATCCTCTCCAAGTTCGAGGAGTACCGCGAAGCCGTCAAGGCCAAGGCGGCTCGTCACGGCGCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGCAACGAACTCATGCGCTTCCACTGTTCAACCTTTTTATGTGACTTGGGACACAACGGGGATTCCGCAATTTGTTCCCAACAATTTTGTAATATTTGCGGAATTATTAAGTCCGGGTTTTCCCCAAAACTCGACGGGATCGCCACGCTGTCTACCAGCTGGAGGGCACACGTGGCGATTCCCGATGATGTGGAACGGGAGTTCCGTTTCATGAACGTGAAGCGGGCCATGCTTGTTTGTCGGGTGATTGCGGGTCGGGTTGGATCGGATTCGGACGAAGTGGAAAAAGAGGACGGGGGGTTTGATTCGGTGATGGCGAGGGGGGAGAGTGGGGTTTACACCCGGCTTGATGAGGAGGAGCTGTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1173 0.5541 MASIATVFNKFLYLLILLVHLGCFIFTTATTTAAGKESPPSKKRKISPLSQPSSPSHSKFKTHKALSSSWHFIKHLFSTKSCKTPTTATAQSSPQSTATTTTTTTVSAAAAAAHSLISLTQPDPDRKQPVSCPESDISTDTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLPGSDPGHNIVQIIFKSGWPESKPFPTITRILKIHNSPKILSKFEEYREAVKAKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHNGDSAICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDEVEKEDGGFDSVMARGESGVYTRLDEEELLVFNPRAVLPCFVIVYSV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00675 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 176 IPR013087 -
Pumo1g00675 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 69 388 - -
Pumo1g00675 390 SUPERFAMILY ADP-ribosylation 179 389 - -
Pumo1g00675 390 ProSitePatterns Zinc finger C2H2 type domain signature. 154 175 IPR013087 -
Pumo1g00675 390 MobiDBLite consensus disorder prediction 44 60 - -
Pumo1g00675 390 MobiDBLite consensus disorder prediction 33 60 - -
Pumo1g00675 390 Gene3D - 176 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00675 Pumo-Chr1 10250544 10252586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00675 70 390 C2H2 Transcription Factor Family AT2G29660 55.758 3.09e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00675 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00675 - - gmx:100785244 676.396