Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00665 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACATGTACAATTCCAATTGGCTTTTGGATGATAACAGGACCAACAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACGCCGGATCGGTGGCACAAGGTGGCTGAGATGATTCCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGCAACATAGAAGCAGGGTTGATCCCAATTCCAGGCTACAGTACCACCACCTCACCCTTCACCTTAGACTGGGTGAACACTCCTGGCTATGATGGCTTCAAAGGACTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTTCTAGGGCTGAAGAAGTATGGCAAAGGCGATTGGAGAAACATTTCGCGTAATTTTGTGATTACTCGGACGCCAACTCAAGTTGCTAGCCATGCTCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCCAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACCTCTTCTTCAGAAGACAGCAAGAGATCTGCTTCACCACAACATTCCGCGATGCTCTCACACCAGCAGCCGAATTCAAGTGCCGCCTCATCTGGATTGAATTTCCAGTGGAGCAATCAGCCAAATGCAGGGGTAGCTATGGCTCTCAACCCTGCACATGATCAAGTGTTCATGTCTCCTTATGGCCTTAACTCTTATGGGTTTAAGGTGCAGGGCCAAAATCTGCATAGAAGTTCTCTTCATGAGTCTCCTTACTTAGGACCTCAGACACAAAACTTGGTTTTCCAAATGCAGCCCTCCCAACACTATTCCCATGCATGA 951 0.4732 MKWEMEILPPASPYMYNSNWLLDDNRTNNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSSEDSKRSASPQHSAMLSHQQPNSSAASSGLNFQWSNQPNAGVAMALNPAHDQVFMSPYGLNSYGFKVQGQNLHRSSLHESPYLGPQTQNLVFQMQPSQHYSHA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00665 316 MobiDBLite consensus disorder prediction 118 137 - -
Pumo1g00665 316 CDD SANT 137 182 IPR001005 -
Pumo1g00665 316 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Pumo1g00665 316 SUPERFAMILY Homeodomain-like 131 185 IPR009057 -
Pumo1g00665 316 Gene3D - 136 186 - -
Pumo1g00665 316 Gene3D - 24 91 - -
Pumo1g00665 316 MobiDBLite consensus disorder prediction 206 245 - -
Pumo1g00665 316 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Pumo1g00665 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Pumo1g00665 316 FunFam transcription factor MYB1R1 136 187 - -
Pumo1g00665 316 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Pumo1g00665 316 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 253 IPR043363 -
Pumo1g00665 316 FunFam Transcription factor SRM1 24 91 - -
Pumo1g00665 316 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Pumo1g00665 316 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Pumo1g00665 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Pumo1g00665 316 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Pumo1g00665 316 CDD SANT 31 77 IPR001005 -
Pumo1g00665 316 SMART sant 28 80 IPR001005 -
Pumo1g00665 316 SMART sant 134 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00665 Pumo-Chr1 10157859 10160807 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00665 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00665 - - gmx:100784163 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00665 1 10157859 10160807 Pumo1g00665 1 10157859 10160807 ECH