Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00663 ATGTTCATTTGGAATGAAACTCGTCCATACTGGCACAGTGGTCCATGGAATGGTGGTGTGGTCTTTGAAGGTGGGGATGATGGGGAAGGAAATGCAGATATCTATTACACTGTGCCAAGTGCATTAGAATTAGTAATCTATATGTTGAATTCGCAAGGCCAATTTGAACAAAGAATGTGGGATGATGAGAAGAAAGAAATGAAACTTTCATGGACTAGTCAAGAATGGGATTGTGATGTTTATGGTAAATGTGAGTCGTTCGCAATCTGTAATCCACTGAGGTCACCTATATGCAGAGGTTTGGAAGGGTTTAAGCCTAGCAACAAAGAGGAATGGAATAGACAAAACTGGACTAACGAGTGCAGAATCCAATGCATGGAGAATTGCTCTTGTGTTGCGTATTCTCACGATGAAGTGAATGGTTGTATGTCTTGGACTGGCAATCTACTTGACATACAACAATTCTCAAGTGAAGGACTTGATCTATATGTTCGTGTTGCCCATAATGATAAAGGGACAAACACAAGAACCATCATTACAATTACAGTGATAGCAGGAACTGTCATCATTGTTATTTGTGCATATCTCATGTGGAGAAGAACTGCCAATCACCCAGCAAGGAAAGGGAACAACAAAGCTTTGCTACAATCTAACAATGGTGAAACATCAGAACATACAAGCCACAAAGTAATTGAAGAACTTTCACAAGTTAAACTACAGGAGCTGTTACTATTTGATTTCGAAAGGGTAGCAACAGCCACAAACAATTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTCGGTCCAGTGTACAAGGGGATACTGCGAGATGGACAGGAAATAGCTGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGGCTTTTTGGCTGCTGTGCTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTGTTTATCTTTGTTCCATCAAAAACTGAAGTTCTAGATTGGGGGAAGCGTTGTAGCATAATAGAAGGAATAGCTCGGGGATTGCTTTATCTTCATAGAGACTCTAGACTAAGAATCATACACAGAGATCTGAAGGCAAGTAATATCTTGTTAGATGAAGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGAATGAAGATCAGGCCAACACTAACAGGGTCTGGATACAATGGAGGAATTGTAATATATTATCTTTAATAGATCTAGGAATATATGATCCTAATCATCATAAGTATATTTTAAGGTGCATACACATAGGACTTCTATGTGGACAAGAACTTGCCATAGACAGGCCCACTATGGCTGCAGTAATTTCTATGCTGAACAGTGATGTTGCATTTCTTCCGCCTCCAAGTCAACCAGCATTCATCCTGTGGCAAAATATGTTGAATCCGGAGTCCTCTAAAGAAAGTCATGGAATTTACTCCATCAATACTGTTAGTATTACAGATATCCTTGGTAGATAA 1563 0.3948 MFIWNETRPYWHSGPWNGGVVFEGGDDGEGNADIYYTVPSALELVIYMLNSQGQFEQRMWDDEKKEMKLSWTSQEWDCDVYGKCESFAICNPLRSPICRGLEGFKPSNKEEWNRQNWTNECRIQCMENCSCVAYSHDEVNGCMSWTGNLLDIQQFSSEGLDLYVRVAHNDKGTNTRTIITITVIAGTVIIVICAYLMWRRTANHPARKGNNKALLQSNNGETSEHTSHKVIEELSQVKLQELLLFDFERVATATNNFHLSNKLGQGGFGPVYKGILRDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLFGCCAEGDEKMLIYEYMPNKSLDVFIFVPSKTEVLDWGKRCSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGNEDQANTNRVWIQWRNCNILSLIDLGIYDPNHHKYILRCIHIGLLCGQELAIDRPTMAAVISMLNSDVAFLPPPSQPAFILWQNMLNPESSKESHGIYSINTVSITDILGR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00663 520 SMART serkin_6 257 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00663 520 SMART ntp_6 99 166 IPR003609 -
Pumo1g00663 520 Pfam S-locus glycoprotein domain 26 107 IPR000858 GO:0048544
Pumo1g00663 520 CDD PAN_AP_plant 101 167 - -
Pumo1g00663 520 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 419 498 - -
Pumo1g00663 520 Pfam Protein kinase domain 257 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00663 520 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 221 332 - -
Pumo1g00663 520 Gene3D Transferase(Phosphotransferase) domain 1 333 424 - -
Pumo1g00663 520 ProSiteProfiles Protein kinase domain profile. 257 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00663 520 ProSiteProfiles PAN/Apple domain profile. 98 167 IPR003609 -
Pumo1g00663 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Pumo1g00663 520 SUPERFAMILY Protein kinase-like (PK-like) 245 503 IPR011009 -
Pumo1g00663 520 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 333 424 - -
Pumo1g00663 520 Gene3D Phosphorylase Kinase; domain 1 216 332 - -
Pumo1g00663 520 Pfam PAN-like domain 106 152 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00663 Pumo-Chr1 10131433 10136603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00663 240 520 Receptor kinase-like Gene Family AT4G04490 45.401 1.04e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g00663 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00663 - - gmx:113002415 717.613