Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00658 ATGTTTGTGAAACCAAAATTGCAAGCAGGAAAAGAACAAGAGCAGCCACACCCTGGTGCCACCTGCCGCCAATTCCTCCTCGCCCTCAACCAACTAACCAACAACCTAATCAACCCTAACAGACACTTGTTCTTCCTTGATCATGATCAACATGAAGCAAAGAAGAGTGATCAACCCTCACAATCACAATTCCTTTGTGGTATATGTTTTGATGACAAACCACTCTCTGATATGTTCAAAGAGGGTAACTGTAACCACCCCTTTTGCACTCACTGCATATCCAAATATGTGGCTACTCAAATACACCAAAACATTCTCAAGGTGATTTGTCCAGACCCTAACTGCTCCGTGGAATTGAAGCCTGAATATTTGCACACCATTTTGCCTAGTCAAGTTGTTGATAGATGGGAGTCTTTGATTGTTGGATCGGAGAAGACTTACTGCCCCTTCAAGGATTGTTCTGTTTTGTTGGCGAATGATGGAGGAAAAGCTGTGACCAGTGCTGAGTGCCCCTCTTGTCACAGGCTATTTTGTGCACAGTGCAAGGTTCCTTGGCATCGAACGATGACTTGTAAGAAATTCCAAAGGGTGAAAAGAAACAAAGACGAAAAAGTGTTGGATAACAAGTTTTTCAATTTGGCCAAAGAGGAAAATTGGAAGAAATGTCCCAAATGCACTATGTTTGTCCAGAAACAGGGTGGATGTGAACACATTGCCTGCAGGTGTGGATGCAACTTCTGCTACATTTGTGGGAAGAATTGGACGCGTGAACATCAATGCAAGCGTTGGTCCCCTAGTTACATAATTCGCTCCCTTCATCAGAGATGCACGAATTGGTTCATGCATACCAATTTGCGTTTTTCGAACCGGAGTGCTGAAATTCGTCGATGA 891 0.4355 MFVKPKLQAGKEQEQPHPGATCRQFLLALNQLTNNLINPNRHLFFLDHDQHEAKKSDQPSQSQFLCGICFDDKPLSDMFKEGNCNHPFCTHCISKYVATQIHQNILKVICPDPNCSVELKPEYLHTILPSQVVDRWESLIVGSEKTYCPFKDCSVLLANDGGKAVTSAECPSCHRLFCAQCKVPWHRTMTCKKFQRVKRNKDEKVLDNKFFNLAKEENWKKCPKCTMFVQKQGGCEHIACRCGCNFCYICGKNWTREHQCKRWSPSYIIRSLHQRCTNWFMHTNLRFSNRSAEIRR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00658 296 Gene3D - 189 295 - -
Pumo1g00658 296 SUPERFAMILY RING/U-box 61 150 - -
Pumo1g00658 296 CDD BRcat_RBR_unk 142 194 - -
Pumo1g00658 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Pumo1g00658 296 SUPERFAMILY RING/U-box 141 196 - -
Pumo1g00658 296 Pfam IBR domain, a half RING-finger domain 213 260 IPR002867 GO:0008270
Pumo1g00658 296 Pfam IBR domain, a half RING-finger domain 143 191 IPR002867 GO:0008270
Pumo1g00658 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 269 IPR031127 GO:0004842|GO:0016567
Pumo1g00658 296 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
Pumo1g00658 296 FunFam RBR-type E3 ubiquitin transferase 61 146 - -
Pumo1g00658 296 ProSiteProfiles TRIAD supradomain profile. 62 264 IPR044066 -
Pumo1g00658 296 CDD Rcat_RBR_unk 218 254 - -
Pumo1g00658 296 SMART ibrneu5 134 191 IPR002867 GO:0008270
Pumo1g00658 296 SMART ibrneu5 204 260 IPR002867 GO:0008270
Pumo1g00658 296 SUPERFAMILY RING/U-box 210 262 - -
Pumo1g00658 296 ProSiteProfiles Zinc finger RING-type profile. 66 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00658 Pumo-Chr1 9974480 9975734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00658 66 251 C3H Transcription Factor Family AT2G19610 29.064 2.28e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00658 K11975 - gmx:102663173 312.383