Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00658 | ATGTTTGTGAAACCAAAATTGCAAGCAGGAAAAGAACAAGAGCAGCCACACCCTGGTGCCACCTGCCGCCAATTCCTCCTCGCCCTCAACCAACTAACCAACAACCTAATCAACCCTAACAGACACTTGTTCTTCCTTGATCATGATCAACATGAAGCAAAGAAGAGTGATCAACCCTCACAATCACAATTCCTTTGTGGTATATGTTTTGATGACAAACCACTCTCTGATATGTTCAAAGAGGGTAACTGTAACCACCCCTTTTGCACTCACTGCATATCCAAATATGTGGCTACTCAAATACACCAAAACATTCTCAAGGTGATTTGTCCAGACCCTAACTGCTCCGTGGAATTGAAGCCTGAATATTTGCACACCATTTTGCCTAGTCAAGTTGTTGATAGATGGGAGTCTTTGATTGTTGGATCGGAGAAGACTTACTGCCCCTTCAAGGATTGTTCTGTTTTGTTGGCGAATGATGGAGGAAAAGCTGTGACCAGTGCTGAGTGCCCCTCTTGTCACAGGCTATTTTGTGCACAGTGCAAGGTTCCTTGGCATCGAACGATGACTTGTAAGAAATTCCAAAGGGTGAAAAGAAACAAAGACGAAAAAGTGTTGGATAACAAGTTTTTCAATTTGGCCAAAGAGGAAAATTGGAAGAAATGTCCCAAATGCACTATGTTTGTCCAGAAACAGGGTGGATGTGAACACATTGCCTGCAGGTGTGGATGCAACTTCTGCTACATTTGTGGGAAGAATTGGACGCGTGAACATCAATGCAAGCGTTGGTCCCCTAGTTACATAATTCGCTCCCTTCATCAGAGATGCACGAATTGGTTCATGCATACCAATTTGCGTTTTTCGAACCGGAGTGCTGAAATTCGTCGATGA | 891 | 0.4355 | MFVKPKLQAGKEQEQPHPGATCRQFLLALNQLTNNLINPNRHLFFLDHDQHEAKKSDQPSQSQFLCGICFDDKPLSDMFKEGNCNHPFCTHCISKYVATQIHQNILKVICPDPNCSVELKPEYLHTILPSQVVDRWESLIVGSEKTYCPFKDCSVLLANDGGKAVTSAECPSCHRLFCAQCKVPWHRTMTCKKFQRVKRNKDEKVLDNKFFNLAKEENWKKCPKCTMFVQKQGGCEHIACRCGCNFCYICGKNWTREHQCKRWSPSYIIRSLHQRCTNWFMHTNLRFSNRSAEIRR | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00658 | 296 | Gene3D | - | 189 | 295 | - | - | |
Pumo1g00658 | 296 | SUPERFAMILY | RING/U-box | 61 | 150 | - | - | |
Pumo1g00658 | 296 | CDD | BRcat_RBR_unk | 142 | 194 | - | - | |
Pumo1g00658 | 296 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 148 | IPR013083 | - | |
Pumo1g00658 | 296 | SUPERFAMILY | RING/U-box | 141 | 196 | - | - | |
Pumo1g00658 | 296 | Pfam | IBR domain, a half RING-finger domain | 213 | 260 | IPR002867 | GO:0008270 | |
Pumo1g00658 | 296 | Pfam | IBR domain, a half RING-finger domain | 143 | 191 | IPR002867 | GO:0008270 | |
Pumo1g00658 | 296 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 51 | 269 | IPR031127 | GO:0004842|GO:0016567 | |
Pumo1g00658 | 296 | ProSitePatterns | Zinc finger RING-type signature. | 84 | 93 | IPR017907 | - | |
Pumo1g00658 | 296 | FunFam | RBR-type E3 ubiquitin transferase | 61 | 146 | - | - | |
Pumo1g00658 | 296 | ProSiteProfiles | TRIAD supradomain profile. | 62 | 264 | IPR044066 | - | |
Pumo1g00658 | 296 | CDD | Rcat_RBR_unk | 218 | 254 | - | - | |
Pumo1g00658 | 296 | SMART | ibrneu5 | 134 | 191 | IPR002867 | GO:0008270 | |
Pumo1g00658 | 296 | SMART | ibrneu5 | 204 | 260 | IPR002867 | GO:0008270 | |
Pumo1g00658 | 296 | SUPERFAMILY | RING/U-box | 210 | 262 | - | - | |
Pumo1g00658 | 296 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 111 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00658 | Pumo-Chr1 | 9974480 | 9975734 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00658 | 66 | 251 | C3H Transcription Factor Family | AT2G19610 | 29.064 | 2.28e-21 | 91.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00658 | K11975 | - | gmx:102663173 | 312.383 |