Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00654 ATGAAGAAAACACCAGGCCCCAGTTTGCATCAGTCTAACCAAAGAAAAAAGAATGTTGGATTCCAAGATAGAGGTGCAGGCAGTGGCACACACAGGCACAATGTTGAGAATCATTCTGCTTTGACATATATCAAGTCTTCCTTCAAGAAATTTTTTACATTGTTTCTCTCTGGGAAGAGAAAAACAGACTCAGAAGCTGCTGAAAGTGATGACAGAAAGAACACACACAAATTTAGAGGGGTATCATCTTCCACAGATGTATCATCTGATAGTTCCAAGAATTCATCAAAATGGGTGTTTTCTCATCCCTCTCCATCATCTGGCACTGCAAGTAGTCAGCTTGGAATGGGAAACTTCACCTTTGAGGAAATTTACAAGGCAACGGCAAAGTTCTCTCTAGATAATAAGATTGGAGAAGGCGCGTTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGATCCCTTGTGGCTGTAAAGCGTGCCAAGAAGGATTTACAAAACAAGAACTTGGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCACAGGAACCTTGTAAGGTGGTATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGAACTCTTCGGGAACATTTAGATGGTATTCGGGGAGATGGACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATATAGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATCTTAATCACTGATAAAATAACGGCAAAAGTGGCAGACTTTGGTTTTGCTCGGTTGGGACCAGAAGATCCTTCTGCAACCCATATTTCAACTCAAATTAAAGGAACAGCTGGCTACATGGATCCTGATTACATGCGAACGCAACATCTCTCTGAAAAGAGTGATGTTTATTCCTTCGGCGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCACAGAGACCTCTCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAAGAGAAGTTGTGATTGCCATGGATCCGAGACTGAGGAGAAATCCAGCCTCAAACAAGGCAGTACAGAAGGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCGGTGAGACGATCACGACCATGTATGAAGAGTTGTGCAGAGGTTCTGTGGGAGATCCGTAAAGATTTTAAAGAAAAAGCATTTTCTCATCCTCCCCGTGGTCCTCACCATTCTGCAGATTTCCCTCAAAGAGATGCTAGGAAGAATAGGCATAAGACACATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCTGCTTAA 1368 0.4064 MKKTPGPSLHQSNQRKKNVGFQDRGAGSGTHRHNVENHSALTYIKSSFKKFFTLFLSGKRKTDSEAAESDDRKNTHKFRGVSSSTDVSSDSSKNSSKWVFSHPSPSSGTASSQLGMGNFTFEEIYKATAKFSLDNKIGEGAFGTVYKGKLNDGSLVAVKRAKKDLQNKNLAEFKNEINTLSKIEHRNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGIRGDGLEIGERLDIAIDIAHAITYLHMYTDHPIIHRDIKASNILITDKITAKVADFGFARLGPEDPSATHISTQIKGTAGYMDPDYMRTQHLSEKSDVYSFGVLLVEMMTGRHPVEPQRPLSERVTIKWAMQLLKQREVVIAMDPRLRRNPASNKAVQKVLKLAFQCLAPVRRSRPCMKSCAEVLWEIRKDFKEKAFSHPPRGPHHSADFPQRDARKNRHKTHGIEDGKGYKFVSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00654 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Pumo1g00654 455 ProSitePatterns Protein kinases ATP-binding region signature. 137 163 IPR017441 GO:0005524
Pumo1g00654 455 MobiDBLite consensus disorder prediction 63 79 - -
Pumo1g00654 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 208 418 - -
Pumo1g00654 455 MobiDBLite consensus disorder prediction 63 112 - -
Pumo1g00654 455 SMART serkin_6 131 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00654 455 Pfam Protein tyrosine and serine/threonine kinase 132 403 IPR001245 GO:0004672|GO:0006468
Pumo1g00654 455 SUPERFAMILY Protein kinase-like (PK-like) 107 408 IPR011009 -
Pumo1g00654 455 MobiDBLite consensus disorder prediction 1 34 - -
Pumo1g00654 455 MobiDBLite consensus disorder prediction 415 455 - -
Pumo1g00654 455 MobiDBLite consensus disorder prediction 1 19 - -
Pumo1g00654 455 Gene3D Phosphorylase Kinase; domain 1 93 207 - -
Pumo1g00654 455 MobiDBLite consensus disorder prediction 415 447 - -
Pumo1g00654 455 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 111 408 - -
Pumo1g00654 455 ProSiteProfiles Protein kinase domain profile. 131 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00654 455 MobiDBLite consensus disorder prediction 80 112 - -
Pumo1g00654 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 95 207 - -
Pumo1g00654 455 Gene3D Transferase(Phosphotransferase) domain 1 208 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00654 Pumo-Chr1 9943162 9946948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00654 89 407 Receptor kinase-like Gene Family AT1G30570 41.317 1.00e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Pumo1g00654 PK_Tyr_Ser-Thr 6.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00654 - - gmx:100819818 803.127