Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00651 ATGATTCTTAGTTGCATGCAGAAAAATTTTCTGGGAAAATATCTTGGTATGGGAAAGGGCACTTTTCAAGACTCTCTTAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGGTGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTATTTCTTGTTCAGTGGACCGATTACCGCCTCGCTGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATTTATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCTCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCCAAAGTTGTGCTGCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAATCAACTCTGGGGACCTCTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTCTTTCTCTACATAGAGAAGTTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCAATTCTGAGATGA 780 0.409 MILSCMQKNFLGKYLGMGKGTFQDSLKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSVIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPILR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00651 259 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Pumo1g00651 259 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Pumo1g00651 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 210 IPR013083 -
Pumo1g00651 259 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Pumo1g00651 259 SMART ring_2 163 200 IPR001841 -
Pumo1g00651 259 PANTHER RING FINGER PROTEIN 41, 151 21 251 - -
Pumo1g00651 259 FunFam RING/U-box superfamily protein 141 210 - -
Pumo1g00651 259 SUPERFAMILY RING/U-box 145 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00651 Pumo-Chr1 9821166 9823209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00651 161 204 C3H Transcription Factor Family AT1G04360 39.583 7.36e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00651 - K25840 gmx:100808567 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00651 1 9821166 9823209 Pumo1g00651 1 9821166 9823209 ECH