Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00648 ATGCCACACCACACCATCGAGGAGGACTCGAACATCTTGGAGATGAACACTACTACTGAGCCTTGTAATAACAGCAATGGTATTACAACTACAAGTGCAAAGAACCTTAGTTCAATTGTGACAAAGAAGTATCCATTTCTGGAAACCAAACTTCGCTTCCAAATGCTTGGGAATTTTGCAACCAATTTACGACAGGTCATTTTTGGCACTAAGCTTGCAGTGCTTTTTCCGGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATAGCCTTGGAAGGCCTTGGATTTTCGCTTTGAGCCTACTTGGACTCACCCCTCTGGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTGAATGCAACCTGTGGTAATGCAACCGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTCAAATTCTCCCTGCTGGGTTCCATTCTCTCAAACCTTCTATTAGTCCTTGGAAGTTCACTCCTCTTTGGTGGCTTAGCCAACCTTAGGAAGGAGCAAAGATATGACAGGAAACAGGCAGATGTAAACTCACTGCTTTTGTTGCTGGGGTTGCTATGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGGGAATATCCTTCTATAGCCACCAGTACTCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATATATCTTCTTTCAATTAAAAACACATCGACAACTTTTTGATGCACAAGAGGATGATGAAAATGAAGATGAGGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTTCTTGGTTGGTTGGTATGACACTTGTCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGGAACGCTGCAGAACATGCTGGCTCAATCATATTTGCTTTTAAGAACAAGTTGGACATATCATTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTTAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGGTGTCTTGCTTTTACAATTATTGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACCTGAAAGGAGTGGTTCTTTTCCTGAGTTACGTAGTCATTGCTGCATGCTTTTTTGTTCACAACACTAGTACTCCACTAATCAATGAAGCATAG 1305 0.4161 MPHHTIEEDSNILEMNTTTEPCNNSNGITTTSAKNLSSIVTKKYPFLETKLRFQMLGNFATNLRQVIFGTKLAVLFPAVPLAVVADFYSLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSILSNLLLVLGSSLLFGGLANLRKEQRYDRKQADVNSLLLLLGLLCHLLPLMFRYALAGEYPSIATSTLQLSRASSIVMLLAYAGYIFFQLKTHRQLFDAQEDDENEDEEKAVIGFWSAFSWLVGMTLVISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPFSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYLKGVVLFLSYVVIAACFFVHNTSTPLINEA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00648 434 NCBIfam calcium/proton exchanger 77 422 IPR004798 GO:0006816|GO:0015369
Pumo1g00648 434 FunFam Vacuolar cation/proton exchanger 268 423 - -
Pumo1g00648 434 FunFam Vacuolar cation/proton exchanger 123 267 - -
Pumo1g00648 434 Gene3D - 123 265 IPR044880 -
Pumo1g00648 434 Gene3D - 270 423 IPR044880 -
Pumo1g00648 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 49 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pumo1g00648 434 Pfam Sodium/calcium exchanger protein 279 420 IPR004837 GO:0016020|GO:0055085
Pumo1g00648 434 Pfam Sodium/calcium exchanger protein 94 251 IPR004837 GO:0016020|GO:0055085
Pumo1g00648 434 NCBIfam calcium/proton exchanger 59 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00648 Pumo-Chr1 9791832 9796324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00648 32 425 Antiporters AT2G38170 67.910 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00648 K07300 - gmx:100778821 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00648 1 9791832 9796324 Pumo1g00648 1 9791832 9796324 ECH
Pumo1g00648 1 9791832 9796324 Pumo9g01545 9 43492786 43497244 PCT