Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00642 ATGAGCAATGCTTCACTTTATGACCATTTGCATGACAAAAACAATGTTGACAAGAGTAGCAGCATTTTGAATTCCTGGAAGATGAGGATCAAGATTGCATTGGATGCTGCCAGGGGAATTGAGTACATTCACAACTATGCAGTGCCACCCATTATCCACAGGGATATCAAGTCCTCAAATATACTCTTGGATTCAAACTGGAATGCCAGAGTTTCTGACTTTGGATTGTCTCTAATTTGGCCTGAGACTGAGCAAGAATTGATGTCCACCAAAGCAGTTGGAACTGTTGGATACATAGACCCTGAGTACTATGTGTTAAATGTGCTAACCACAAAGAGTGATGTGTATGGCTTAGGAGTGGTGATGTTGGAGCTTCTCACAGGAAAAAGAGCAGTGTTCAAACCTGAAGATGGGTCAGGCCCTATGGGGGTGGTGGAATACACAGGGCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTATAGAGTTGGACAGCCAGAAGTGAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCATTGTGTGAACTTGGAGGGAAAGGAGAGGCCTGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCGTTGGCTTTCATTGAGGGCACCCCTACTAGCCTCTCCATAGCTTCATACTCTGCCCCTCTTGAATGA 687 0.4498 MSNASLYDHLHDKNNVDKSSSILNSWKMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWPETEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKPEDGSGPMGVVEYTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNLEGKERPEMTDIVANLERALAFIEGTPTSLSIASYSAPLE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00642 228 FunFam Serine/threonine-protein kinase-like protein CCR4 1 219 - -
Pumo1g00642 228 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00642 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Pumo1g00642 228 Pfam Protein kinase domain 6 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00642 228 PIRSF ILK 169 213 - -
Pumo1g00642 228 PIRSF ILK 1 154 - -
Pumo1g00642 228 SMART serkin_6 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00642 228 Gene3D Transferase(Phosphotransferase) domain 1 1 213 - -
Pumo1g00642 228 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 213 IPR044815 GO:0004674
Pumo1g00642 228 SUPERFAMILY Protein kinase-like (PK-like) 1 204 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00642 Pumo-Chr1 9742050 9742803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00642 1 219 Receptor kinase-like Gene Family AT3G55950 66.812 2.00e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo1g00642 Pkinase 1.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00642 - - gmx:100776682 444.891