Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00639 ATGTGCAGTGGTTCCAAGAGTAAACCTTCTCAAACTGGTTTAATAATGGGGGATGAGTATGGAAGACAAGAAGGGTTGCATCATAAAATTTCTGCTTTGCTCGAGTTTTCAGCCGCAGATGATGTAATGGCTTTCAAAGATGCTGTTGAAAAAGAGGGTCACGATGTTGATGAGGTGGGGTTGTGGTATGGGAGGAGGGTTGGCTCAAAGGAATTGGGTTTTGAAGAGAGGACCCCTCTTATGATTGCTGCTATGTTTGGAAGCAAAAGTGTGTTATCTTATATTCTTGGGACGGGCCGTGTTGATGTTAACCTGGCTTGTGGGTCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGCCGGGGGCTCTGCTGCCTCCCTTGAAGTTATCAAGCTTTTGCTCGATGCATCGGCAGATGTTAGTACTGTTGATGCCAATGGAAACAGGTCGTGCGACTTGATTGTCTCGGTGTCTAATGGTGTGTTCAATTCAAGAAAGAGGATACTACAGGCCATACTAGAAGGTGCAGGTGGTATTGGTGAGGGTTGCTTTAAATTTGAGGAACATGTTGGCCAAATGGAGAAACAGCAATGGCAAGATGTAGATGCACTTCAGGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAAAATGGGATATATAGCACAGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGAGCTTATTCTCACGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCAAGGAAATATCAATATAGCTGCGTCCCTTGCCCCGAGTTTCGGAAGGGATCCTGCAGCAAGGGGGATGCCTGTGATTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCGCTATATAAAACACGGCTTTGCAAGGAGGATACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAACATGGAGGACCTTCGCCCCGTGTATGCTTCCACTGGTTCTGCTATGCCTTCTCCCAGATCATATTCTGTTAGTACTCCTTCATTGGACCCTTTCACACTGGGCTCTCCATCTGCCTTGATACCACCTGCCTCAACCCCACCTTTGACTCCATCCGGAGGTTCTTCTCCTGCAGGTGGAACTATGTGGCGCTCTCAGTCTCATGTTGCAGTCCCAACCCTTCAGCTGCCCCGAAGCAGATTGAAATCTGCACTAAATGCTAGAGATGTTGAATTGGACATGGAATTGCTTGGACTAGAAAATCAATCGACTTTTGATGCATCAGCTAATGATGGAAGAGATGGCTGGTCTTTCATCACCTTCTAA 1356 0.4624 MCSGSKSKPSQTGLIMGDEYGRQEGLHHKISALLEFSAADDVMAFKDAVEKEGHDVDEVGLWYGRRVGSKELGFEERTPLMIAAMFGSKSVLSYILGTGRVDVNLACGSDGATALHCAVAGGSAASLEVIKLLLDASADVSTVDANGNRSCDLIVSVSNGVFNSRKRILQAILEGAGGIGEGCFKFEEHVGQMEKQQWQDVDALQVSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYQYSCVPCPEFRKGSCSKGDACDYAHGIFECWLHPALYKTRLCKEDTGCTRRVCFFAHNMEDLRPVYASTGSAMPSPRSYSVSTPSLDPFTLGSPSALIPPASTPPLTPSGGSSPAGGTMWRSQSHVAVPTLQLPRSRLKSALNARDVELDMELLGLENQSTFDASANDGRDGWSFITF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00639 451 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Pumo1g00639 451 Gene3D - 276 337 - -
Pumo1g00639 451 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Pumo1g00639 451 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Pumo1g00639 451 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Pumo1g00639 451 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Pumo1g00639 451 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Pumo1g00639 451 Gene3D - 26 171 IPR036770 -
Pumo1g00639 451 MobiDBLite consensus disorder prediction 371 393 - -
Pumo1g00639 451 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Pumo1g00639 451 SMART ANK_2a 75 105 IPR002110 GO:0005515
Pumo1g00639 451 SMART ANK_2a 110 142 IPR002110 GO:0005515
Pumo1g00639 451 SUPERFAMILY Ankyrin repeat 72 149 IPR036770 -
Pumo1g00639 451 PANTHER UNKEMPT FAMILY MEMBER 35 425 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00639 Pumo-Chr1 9685657 9687012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00639 28 420 C2H2 Transcription Factor Family AT5G12850 49.052 4.39e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo1g00639 Ank_2 3.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00639 - - gmx:100806121 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00639 1 9685657 9687012 Pumo1g00639 1 9685657 9687012 ECH
Pumo1g00639 1 9685657 9687012 Pumo1g00264 1 4228464 4233634 ECH
Pumo1g00639 1 9685657 9687012 Pumo9g01553 9 43619834 43621156 ECH
Pumo1g00264 1 4228464 4233634 Pumo1g00639 1 9685657 9687012 ECH
Pumo3g03038 3 55134718 55139571 Pumo1g00639 1 9685657 9687012 ECH
Pumo1g00639 1 9685657 9687012 Pumo9g01553 9 43619834 43621156 PCT