Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00635 ATGTCCATCCACTATTCCCCGCCCCCGCCGGCCACCCTCGACTCCATCCGCGTCTCCCTCTCCGACATCTCCACTCCCCCGCCGGACCACCGTCCCTTCGACACGCCCCGCCGCTTCGCCGCCTTCGCCCACCGCCTCTCCCACCACCTCCTCCTCCTCCTCCCGCTCCCGCACTCCCCGCCCGTCCACACCGCCCTCAAGGGACTCTCCGCCGAGCTCTCCAAGGCCGCCGAGTCCGTCTCCATCTACAACAACGGCAGCAAGATACTCGTCCTCCTCAGCTGCAAATTCCTCTCTTCCGCCCTCCAGGAAGGCGCCGTCGCCATCGCCGCCTGGCTCGCACTCCTCGCTTCCGCCCTCCCCGCCGCCGGCGAAGATGACGGCCTCCGCAAGAATGCCTCCGACCTCGCCAGGGACATGAAGCTCGCACAGTTCAAAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGGGAAGGGAGAGAGAGCAGCAAAGCAGTGCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACTTTGGTGATCGTGCTGAGTTTTGTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTGCCTGAAAGAAGGATATTGATGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGGAGCCTGTCTCTGTGTGCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTCCTTTGCCCCTTGACCAAGGAAGTCATGAGGAACCCTGTGGTTGTTCTGGAGTCCTCTCAGGCCTATGAGAGGACTGCTATTGAGTACTGGTTTGAACGGTGCATCCAGGATGGCCGTGACCCCACTTGTCCGGTCACCGGCAGGGTTCTTAAGTCCTTGGAGCTAAAGCCCAACATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTTGAGTACCAAATCAAATCTGCAGTTCAGTATCTGAATGAGGAGCCCTTGTCTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCACTAGAAGATACATAATCAGGAATGCTGGTGTTGTGCAGTTGATAGTGACTTTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAATGACTTTACTTAGCTTGGCCGAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAACTCTGAGAAAGAGAGAGAATATGCTATCAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGCATAAGAATTGCATCAGAAAAAGGTGCATTAGTTATTCTCTCGAGTATAGCAGGAAATCTGGAGTATCCATCCTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCGTTGATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAAAGTATTTGTCGAACTTCTGTCTAATCAAGAAGGAAGGGGACCAAGTCTGCAAGCATTGTATAACTTGTCAGGATTGGATGGCAATGCAACCATCCTTATCGAATCTTCAGTCCTTCCATCTCTTATAGAAGTTTTATTTGATGAGCTGGATCCATCATATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCGGCTGACAAGAAAGGAAACCCAATGCAGTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTGAACAGTTTGCCCTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATCGTCTCCTCAGGCATCAGAGTTAGTAGCAAATCACATCACGTCCAAGGGTGGCTTTGGAACGGTGATACCATTTCTTGAACATCCAGAAGTTGAACATAGAGTGTTTGCTTTCAAGCTTACAAGACTACTCTCTGAATGGTTTAGTCAATATATTGCAAATGAGTTGAGACTTTCAAACAAACTTACAATACTCAAAGAAAAACTGTTAAATAACCAATCCACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATCTTTCCCTCTCAGAAGGTGAAATACAGACACTTTTAGGAGGTGATTTTGTGGAATGGACTGCTGTTACTCTCAAGAACCAGCGACGTGTTTCCAATGCAAGGCCTTCTCATACTGCATCAGGCATGCAGGAAGGTCTTATAGGTCTGTTGCTTCACTTCACAAGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAAAATCGCCTTATGGCCATTTTCTGTGAGCAGCTGGATTATACTTCAAAACCAAAGGTAAAACGACTTGCTGCCATTGGATTGAAAAACTTGTCAGAATTTGGAAGGCCAGTTACTGCTGGGGACTCTAAACCACCATCTCCCAGTGGGTTCTGCTCTTCCCTGGTGCTCATGTGTGGGAAAGCCGCTAGTCAACCTTCCACATGCCCCATTCACAACCATCCGTGTGAGGAAGATAATCAGCTGTGCCTCCTCAAGAGCAACTGTATCAAACCCCTGGTTGATATCCTCCATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCACTATCTACTTTAGTACTAGATTACACATCTCACAGTTTCAAAAGAGTTGTGGATGAGCTTGAGCATCTGGGTGCAATTGATTCTCTTATCACTCTTTTTACAGAAGTTAGATCTGAGGAGCTTCAGGAGAAGACAATTTGGATGATAGAAAAGATATTGAGAGTGGAAAATATCAGCAATCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGGAATACCAACTCAAGGAAACATGCTCAAGATGCTCTAACCCTCCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTAGAAGATAG 3123 0.4675 MSIHYSPPPPATLDSIRVSLSDISTPPPDHRPFDTPRRFAAFAHRLSHHLLLLLPLPHSPPVHTALKGLSAELSKAAESVSIYNNGSKILVLLSCKFLSSALQEGAVAIAAWLALLASALPAAGEDDGLRKNASDLARDMKLAQFKVSENEERVWCTLEKEGEGRESSKAVQSGIVMDLARALGFDFGDRAEFCNQVKLFKGDPFRSHSVPERRILMSLERILSNWSVEPVSVCPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRNPVVVLESSQAYERTAIEYWFERCIQDGRDPTCPVTGRVLKSLELKPNIGLAGAIEEWVGRVVEYQIKSAVQYLNEEPLSVDHVERALDHVYKVSEEHPTRRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALMTLLSLAEDEESRKIMLERGITRLAVHSLIGNSEKEREYAIKLLLEFCNDEDCCIRIASEKGALVILSSIAGNLEYPSLSNLAEEVLRQMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIEMASLVGRMTLTNSCKEQIARQGAKVFVELLSNQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDELDPSYELKSLAASTIANIVSKPGHWELASADKKGNPMQSEIIVLRLLGLLNSLPSQCQVIVLRILCGITSSPQASELVANHITSKGGFGTVIPFLEHPEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANLSLSEGEIQTLLGGDFVEWTAVTLKNQRRVSNARPSHTASGMQEGLIGLLLHFTRNLDQQTLNIVRENRLMAIFCEQLDYTSKPKVKRLAAIGLKNLSEFGRPVTAGDSKPPSPSGFCSSLVLMCGKAASQPSTCPIHNHPCEEDNQLCLLKSNCIKPLVDILHDNDTDVQLAAVDALSTLVLDYTSHSFKRVVDELEHLGAIDSLITLFTEVRSEELQEKTIWMIEKILRVENISNRYALNHSLVRALVEAFKHGNTNSRKHAQDALTLLKQLSGVSGKTSSQTRARR 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00635 1040 Pfam U-box domain 255 324 IPR003613 GO:0004842|GO:0016567
Pumo1g00635 1040 SMART Ubox_2 254 323 IPR003613 GO:0004842|GO:0016567
Pumo1g00635 1040 SUPERFAMILY RING/U-box 253 324 - -
Pumo1g00635 1040 Gene3D - 327 852 IPR011989 -
Pumo1g00635 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 58 1030 - -
Pumo1g00635 1040 Pfam Armadillo/beta-catenin-like repeat 896 932 IPR000225 GO:0005515
Pumo1g00635 1040 ProSiteProfiles U-box domain profile. 250 330 IPR003613 GO:0004842|GO:0016567
Pumo1g00635 1040 Gene3D - 882 1035 IPR011989 -
Pumo1g00635 1040 CDD RING-Ubox_PUB 255 310 IPR045210 -
Pumo1g00635 1040 SMART arm_5 571 614 IPR000225 GO:0005515
Pumo1g00635 1040 SMART arm_5 941 982 IPR000225 GO:0005515
Pumo1g00635 1040 SMART arm_5 893 934 IPR000225 GO:0005515
Pumo1g00635 1040 SMART arm_5 809 850 IPR000225 GO:0005515
Pumo1g00635 1040 SMART arm_5 533 570 IPR000225 GO:0005515
Pumo1g00635 1040 SMART arm_5 363 407 IPR000225 GO:0005515
Pumo1g00635 1040 Coils Coil 475 502 - -
Pumo1g00635 1040 SUPERFAMILY ARM repeat 335 984 IPR016024 -
Pumo1g00635 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 326 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00635 Pumo-Chr1 9597591 9603828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00635 252 1029 U-box Gene Family AT1G20780 29.597 6.65e-86 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00635 - - gmx:102659945 1839.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00635 1 9597591 9603828 Pumo1g00635 1 9597591 9603828 ECH