Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00626 ATGGAGGTCGTCGATAATTCTCCCAACAGGAAGCGAAAACGAGGGTTTTCGAGAAAGCTTGGAGTCAATGAAAAAGTGGAGGTGAGGAGTATGGATTGGGGGTTTCAAGGATCATGGCACCCTGGGACAGTTATCCAGTGTGAGAAGCTGAAGCGGCATGTCAGATATGAAAATGTTTTGGATGATGATGGGGTGAATCATCTTGAGGAGGTAGTGAGTGTTTCAGAAGCTTTGGATGGTGATATTGGAAATGCAGACTGCTGTGGGCGTGGGTCCATTAGGCCATTGCCTCCTTTCGTTGAGTTTGAGAGAGGGGACCTTAAGTTTGGTCTGTGTGTTGATGTGAACCACGAGGAAGCTTGGTGGGAAGGTGTTATATTCGATCACTGTGACGGAATGGAGGAGAGGAATGTGTTTTTCCCTGATTTGGGTGATGAAATGCAAGTTGGAATTCATCAGTTGCGGATTACTCAGGACTGGTATGAAGTTACCGAGGACTGGGAGCAGCGGGGGAACTGGGTGTTTCTTGATTTGGTTGAGGAGCAGAAGAGGAAATTGTTTGTTGCAGTTTCAGCTAAGCAGATTTGGTATGATGTACGCATAAAAAGGGGATTTGAGACGATTAGAGAGTGGACATGTAATGTGAAGTACTTGTGGAGAAATCTGGTAATGGAGGTAGTTAATGACTACTTATCTCTTACGGTAAAAGAAGTTATCTCAGTCTTAAACCTTCCATGGAGTTTATTAAATGAAGCACAAGAGCTGGAATCTATTGAAGCTATGGCTAGTGTTGACTTAAGCTTGACCTTGCCTGTTCCTCCTGTTAAAGAGAACTTACCTGAGTTGCAAGGTACTTTCTGTTTTGAAGAAAGTAGAGAAAATACATCCTCAACTCATTTAAGGTCCAACTATTGGAAACCTCTGAAGTTGTCTGAAGTTGAATTATGTCCTGATGCTGTTAGGGAATATCTACTTGCTTCCAAAGCAGATAGGCCATTATGGAAGGAAAAATTACAAAAACATCTTGTATGTCTTGGATGGAAAATTCAGTGGTCAAATAAAAATAATGTTAAACGTTACAGGTACACTGTTCCTGATATGCAGGGCAAAAAGTTTTACCTTTCACTCGTTGAAGTTTGTAGAGTTATGAAAAAGGATCCCAACATAATTGATCCTACAGCTGATTCTGATCTTTCAGATGTGCCTCTTAATCCATCAGGAAATGTTCAGAATCAAGACACCTTTCCTCCAACCGTGCCATCTTCTCTAGGTTGA 1275 0.4188 MEVVDNSPNRKRKRGFSRKLGVNEKVEVRSMDWGFQGSWHPGTVIQCEKLKRHVRYENVLDDDGVNHLEEVVSVSEALDGDIGNADCCGRGSIRPLPPFVEFERGDLKFGLCVDVNHEEAWWEGVIFDHCDGMEERNVFFPDLGDEMQVGIHQLRITQDWYEVTEDWEQRGNWVFLDLVEEQKRKLFVAVSAKQIWYDVRIKRGFETIREWTCNVKYLWRNLVMEVVNDYLSLTVKEVISVLNLPWSLLNEAQELESIEAMASVDLSLTLPVPPVKENLPELQGTFCFEESRENTSSTHLRSNYWKPLKLSEVELCPDAVREYLLASKADRPLWKEKLQKHLVCLGWKIQWSNKNNVKRYRYTVPDMQGKKFYLSLVEVCRVMKKDPNIIDPTADSDLSDVPLNPSGNVQNQDTFPPTVPSSLG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00626 424 CDD Tudor_Agenet_AtDUF_rpt1_3 22 98 - -
Pumo1g00626 424 SMART agenet_At_2 18 82 IPR014002 -
Pumo1g00626 424 SMART agenet_At_2 105 162 IPR014002 -
Pumo1g00626 424 MobiDBLite consensus disorder prediction 399 424 - -
Pumo1g00626 424 MobiDBLite consensus disorder prediction 391 424 - -
Pumo1g00626 424 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 19 219 - -
Pumo1g00626 424 Pfam Agenet domain 24 98 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00626 Pumo-Chr1 9532459 9534158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00626 29 421 PHD Transcription Factor Family AT5G58610 32.414 1.18e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00626 - - gmx:100814680 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00626 1 9532459 9534158 Pumo1g00626 1 9532459 9534158 ECH
Pumo1g00626 1 9532459 9534158 Pumo9g01565 9 43732196 43739368 PCT