Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00624 ATGTCTCCACAAAATCGGAGATTCTCAACACTCCATGCAGCATGCAAATTTTGTATGGAAAAAGGTATTTCTAAATTGGCTGTGTCTGACATGAAACCTTTAAATGTCTCAAGCATGAATGAAAAAAATGTTGATCAGTTTTGGAGTGGGGAACTAGTTTGTAGACCATCCCAGTTGCTTCCAAAGGTCCCTGACTTGCAGACTATGGATGGTGGTGCTGCTAGTAGATCAGCTGGGGAACTAGTTTGTAGACCATCCCAGTTGCTTCCGAAGGTCCCTGACTTGCAGACTATGGATGGTGGTGCTGCTAGTAGATCAGCTGGGGAACTAGTTTGTAGACCATCCCAGTTGCTTCCAAAGGTCCCTGACTTGCAGACTATGGATGGTGGTGCTGCTAGTAGATCAGCTGGGGAACTAGTTTGTAGACCATCCCAGTTGCTTCCAAAGGTCCCTGACTTGCAGACTATGGATGGAGGTGCTGCTAGTAGATCAGCTGGAAATCGAAAGCAGAAAAGCTTGAGGGATTCAGAGGCCAACATACCCAAGTGCCAAAGTAATGGATTGCCTTTACGGGTGCTAAGATCCAAAAAGAGGGTGCAAAAGGTGTCTGCCCCTTCTCTTTTACATCATAAACCTCTGAATGTTCTGTCTTGCTTGATAGACAACAACATCATCTTACCGAGGTCTAAGGTTTCTTATAAGGTGAAAGGCAGGCACCGTAAAGTCCGTACTTTGGCTGATGGGAAAATAACTCGCGATGGAATCAAGTGTAACTGTTGCCTGGCAATATACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGAAAATGGTAAATCACTCTTAGATTGCCAGATACAAATGATGAACGATCATAAGACAAGGGAAACTAGTGGAAAATCATTCAGTGGTTTGTCTCCAGCTGAGAATGACTACATGTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATAAATGTCCGTCTTCATTTCATAAGACGTGTCTTGGTTTGCAGGATATCCCTAATGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCGAAGGAAAATTGATGGAGATGAGGTTGGACATTTCCTTACTTGCTTTCAGTGTGAACATAAATATCATGTTAGGTGCCTGGAAAATGGAGCTGCAGATATATCAACAAGATATCTTGGAAACTGGTTCTGTGGAAAAGACTGTAAAAAGATATATGAGGCCCTTCATAAATCATTAGGAGAGCCAGTTTCAGTGGGTGTGGACAATCTAACTTGGACATTGGTGAAGTTTATCAACCCTGACAGTTGTGAACTTGGTAGTAGTAAAAGCGACTTATTGGCAGAAAGTTACAGCAAGCTCAATCTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTTCACAGGCAGAGATCTTGTGGAAGATGTTATATTCAGCAGATGGTCAGGGCTAAACCGATTGAATTTCCAGGGTTTCTATACTGTGCTACTTGAGAGAAATGAAGAACTGATTAGTGTGGCAACTGTTAGGGTCTATGGGAAGAAGGTTGCTGAAGTACCTCTTGTTGGTACCAGATTACAATATCGTCGGCATGGAATGTGTCGCATTTTAATAAAAGAGCTTGAAAAGGTACTCACGCAGTTAGGGGTGGAGAGGCTTGTTTTGCCTGCTGTTCCTAGTGTGCTAGAAACATGGACCCGCTCTTTTGGCTTTGCAAAGATGACTAATTGTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTGCCATCATGTGCCAAAAGCTATTGACTAATAATCCATCTCCAGATCAAATGTTGTTAATAGAGTCACGACAACCAAAATGTGATGTTTCTTCTGGAAGTTGCTGTGTTAACTTCAGTAAGTCTAGTCCAGTATGTGAACTGTACCAAGTAGAAGAGATTGACGAAGGAGGGATGAAGGATCAACAAATGGAGGATACTTGTGCTGGCAACAATGATCAAGTTATTGGTGCTGCTGACTCGGTCACCATGACCATGGTGGAGCGACCGATTCCTGTGGATCAACAGTGCCAGAATGGAACAACCAGCGCAGAGTGCTCTATTGATAAACAAGTTGACAGGAATAATGGCCTGTGTAAGTTCTACACGCGAAGGAAAGTGAGAAAGACATGTGAAGAATTTAGCATGCCATCATGA 2256 0.4295 MSPQNRRFSTLHAACKFCMEKGISKLAVSDMKPLNVSSMNEKNVDQFWSGELVCRPSQLLPKVPDLQTMDGGAASRSAGELVCRPSQLLPKVPDLQTMDGGAASRSAGELVCRPSQLLPKVPDLQTMDGGAASRSAGELVCRPSQLLPKVPDLQTMDGGAASRSAGNRKQKSLRDSEANIPKCQSNGLPLRVLRSKKRVQKVSAPSLLHHKPLNVLSCLIDNNIILPRSKVSYKVKGRHRKVRTLADGKITRDGIKCNCCLAIYSFVGFENHASGSSTCRPSASIFLENGKSLLDCQIQMMNDHKTRETSGKSFSGLSPAENDYMCSVCHYGGELILCDKCPSSFHKTCLGLQDIPNGDWFCPSCRCGICGRRKIDGDEVGHFLTCFQCEHKYHVRCLENGAADISTRYLGNWFCGKDCKKIYEALHKSLGEPVSVGVDNLTWTLVKFINPDSCELGSSKSDLLAESYSKLNLALSVMHECFEPLKESFTGRDLVEDVIFSRWSGLNRLNFQGFYTVLLERNEELISVATVRVYGKKVAEVPLVGTRLQYRRHGMCRILIKELEKVLTQLGVERLVLPAVPSVLETWTRSFGFAKMTNCERSQFLDYTFLDFQGAIMCQKLLTNNPSPDQMLLIESRQPKCDVSSGSCCVNFSKSSPVCELYQVEEIDEGGMKDQQMEDTCAGNNDQVIGAADSVTMTMVERPIPVDQQCQNGTTSAECSIDKQVDRNNGLCKFYTRRKVRKTCEEFSMPS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00624 751 CDD NAT_SF 517 577 - -
Pumo1g00624 751 MobiDBLite consensus disorder prediction 149 182 - -
Pumo1g00624 751 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 500 599 IPR016181 -
Pumo1g00624 751 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 461 623 IPR000182 GO:0016747
Pumo1g00624 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 367 IPR013083 -
Pumo1g00624 751 ProSiteProfiles Zinc finger PHD-type profile. 323 368 IPR019787 -
Pumo1g00624 751 Gene3D - 486 608 - -
Pumo1g00624 751 Pfam PHD-finger 325 367 IPR019787 -
Pumo1g00624 751 SMART PHD_3 367 420 IPR001965 -
Pumo1g00624 751 SMART PHD_3 325 366 IPR001965 -
Pumo1g00624 751 Pfam Tify domain binding domain 248 300 IPR032308 -
Pumo1g00624 751 SUPERFAMILY FYVE/PHD zinc finger 304 366 IPR011011 -
Pumo1g00624 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 422 IPR013083 -
Pumo1g00624 751 PANTHER PHD FINGER PROTEIN 12 3 698 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00624 Pumo-Chr1 9524187 9532014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00624 191 570 PHD Transcription Factor Family AT5G58610 51.036 1.56e-125 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo1g00624 TDBD 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00624 - - gmx:100814680 1020.38