Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00621 ATGTCTTGTTCCGTGGCAGTTCCGAGTTCCCCTGTGTTCTCTCTCTTCAACAACAACAATAACAATAACAAGTCTTCTTCTTCGAGTTCCACCGCAGAACCTCTCATGCTCTCTTCTCTTTCCATTCCCTCTACGACGCCGTCTTGCTCCTCACCCTCTCCACCCTCCTCTCCCTTGTTGAAGAGAAGGAGACCCGCCAAACTCGACATTCCCCTCGCTTCTTTCGCTTTGGCGCTCTCGCCGGCGCCGCCGTCGTCGGCCACGGACTCCGTCGTCGAGGTTGACGGACGTGGCTTTTCTGTGTTCTGCAAAAGAGGAAGGAGGCAACACATGGAGGATCGTTACTCCGCTGCCGTTGATCTTCACGGTCAACCAAAACAGGCTTTTTTTGGGATATTTGATGGGCACGGGGGCACAAAGGCCTCGGAATTTGCTGCACATAACTTGGAAAAGAATGTGTTGGATGAGGTGGTTAGGAGAGATGAGAGTGACATTGAGGAGGCAGTGAAGCATGGTTACCTCAACACGGATTCTGAATTCTTGAAGAAGGACGGGAATGGTAACCTTGTTGTGTCCAATGCTGGGGATTGTCGTGCTGTCATTAGCAGAGGGGGTGTGGCAGAAGCCCTCACATCTGATCACAAGCCTTCTAGGGAAGATGAAAGGGACAGAATTGAGACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTTTGGAGGATCCAAGGGTCATTGGCTGTTTCAAGGGGAATTGGAGATAGAAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAGTCTCAGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGGTAGATATTGCTCGTCCTTTTTGTGTTGGGAACAATAG 921 0.4962 MSCSVAVPSSPVFSLFNNNNNNNKSSSSSSTAEPLMLSSLSIPSTTPSCSSPSPPSSPLLKRRRPAKLDIPLASFALALSPAPPSSATDSVVEVDGRGFSVFCKRGRRQHMEDRYSAAVDLHGQPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIEEAVKHGYLNTDSEFLKKDGNGNLVVSNAGDCRAVISRGGVAEALTSDHKPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIESQHDLLILASDGLWEKVSNQEAGRYCSSFLCWEQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00621 306 SMART PP2C_4 88 302 IPR001932 -
Pumo1g00621 306 ProSiteProfiles PPM-type phosphatase domain profile. 98 306 IPR001932 -
Pumo1g00621 306 MobiDBLite consensus disorder prediction 16 61 - -
Pumo1g00621 306 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Pumo1g00621 306 Pfam Protein phosphatase 2C 99 297 IPR001932 -
Pumo1g00621 306 CDD PP2Cc 97 303 IPR001932 -
Pumo1g00621 306 Gene3D - 92 304 IPR036457 -
Pumo1g00621 306 PANTHER PROTEIN PHOSPHATASE 2C 32 297 IPR015655 GO:0004722|GO:0006470
Pumo1g00621 306 MobiDBLite consensus disorder prediction 16 47 - -
Pumo1g00621 306 SUPERFAMILY PP2C-like 98 301 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00621 Pumo-Chr1 9455265 9456917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00621 1 294 PP2C-type Phosphatase Gene Family AT2G30020 54.571 1.82e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00621 K17506 - gmx:100779913 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00621 1 9455265 9456917 Pumo1g00621 1 9455265 9456917 ECH
Pumo1g00621 1 9455265 9456917 Pumo9g01568 9 43804295 43806890 ECH
Pumo1g00621 1 9455265 9456917 Pumo9g01568 9 43804295 43806890 PCT