Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00616 ATGCAAAATGGTTCCTGGCTCAGGCACAGGCTCAAGCACACGCCCGCCGCCGCCGTCGCAGCCGCCGGAGAACGACAGGTGACCGTCTCCGACGTCCTCGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACCACTCCTCACCCCTCTCAACAAAAGGCTTAGACTCTTCCACCATTAGAGCAATTCCACTCTTCATCTATGAACACAACAACAACAACAACAACAACAAGGTCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGTTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCTATTGTAGCAAGTGTTGTTGTGGAGAGTGATTCTAGGGTGGTGGTGTCATCAAGTGATCATGGTGATGAACATGGTGGAGGAGATGATTTGGTTGAGATTGTGATTGAAGGTGCTCCAAGTTCTGAGATTATTAGAGAGGGTCATGAGCATGGCAATAATAATGGAGGAGCAAGAACAAGTGTTTCTGTGTCAGAAACTTCTTCTGAGTTCTTTGGGTGCTCTTTGGAGAGATTAATGCTTGGCAAGGTTTTCCCATCCACTAATGTAAATTAA 690 0.4667 MQNGSWLRHRLKHTPAAAVAAAGERQVTVSDVLGPARFHHFHSFNIEDHSSPLSTKGLDSSTIRAIPLFIYEHNNNNNNNKVQEEEEEEEEELECVICLSAFEVGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVASVVVESDSRVVVSSSDHGDEHGGGDDLVEIVIEGAPSSEIIREGHEHGNNNGGARTSVSVSETSSEFFGCSLERLMLGKVFPSTNVN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00616 229 FunFam RING-H2 finger protein ATL1 44 142 - -
Pumo1g00616 229 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Pumo1g00616 229 PANTHER RING-H2 FINGER PROTEIN ATL16 49 189 IPR044600 GO:0016567|GO:0016740
Pumo1g00616 229 Coils Coil 71 99 - -
Pumo1g00616 229 SUPERFAMILY RING/U-box 77 144 - -
Pumo1g00616 229 CDD RING-H2_EL5-like 95 137 - -
Pumo1g00616 229 Pfam Ring finger domain 94 137 IPR001841 -
Pumo1g00616 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 144 IPR013083 -
Pumo1g00616 229 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00616 Pumo-Chr1 9398479 9399382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00616 50 193 Rapid Response to Elicitors AT3G16720 35.811 2.52e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00616 - - gmx:100816238 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00616 1 9398479 9399382 Pumo1g00616 1 9398479 9399382 ECH
Pumo1g00616 1 9398479 9399382 Pumo9g01575 9 43879076 43880097 PCT