Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00611 ATGTCAGTATACGACGCCGCTTTCGTGGACACAGAGCTCTCAAAGCGCACCTCCATCTTCGGGCTCCGCCTCTGGGTCGTCATCGGCATCCTCGTCGGATCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCACCTCCCGCCGCCGCCACCACCACCATCACCACAAGCACCGCCGCACCACCTCCGCCGTCCCCTCTCCCCCCATCTCCAAGGAAATCCTCGAGATCGTCCACGTCCCCCCGCCCCCCGCCACCGTCCACCTCCCCCCGCCGAAGCCCGACCACCCCCGCTCCGCCCTCTACTCGAGCGGCGAGAGCAGAGCAACCGTTAGCGTCTGCGAAACGGCGTCGTCGCTGGGCAGCGGGAGTGTGGGCCCCGAAGTGTCGCATCTCGGGTGGGGGAGGTGGTACACGCTCCGAGAACTCGAAGCTGCAACTAATGGCTTGTGTGAAGAGAACGTCATTGGTGAAGGTGGCTATGGAATCGTGTATCGTGGGTTGTTACCTGATGGCACCAAAGTTGCTGTTAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAACAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGATTGCTTGGATATTGTGTTGAGGGGGCGTACAGGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACTTGTAAGCCCTATGACATGGGATATCCGAATGAACATTATATTGGGCACGGCAAAAGGATTGGCTTATCTTCACGAGGGTCTTGAACCAAAAGTTGTCCACCGAGACGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCTGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCGTGCACTGGAATGCTGACTGAGAAGAGTGACGTGTATAGTTTCGGGATACTTATCATGGAAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCGAAGATTGCTGAAAAGCCGTCTTCAAAGGCTCTTAAACGGGCTCTGTTGGTTGCTCTTCGATGTGTCGACCCTGATTCGGCAAAGCGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTAGAGCATAAGGACTCAAGATTAGATAAAAGGCAGAATGGTGCAGAGATCACTGATCAAAGCGAAGCTGATAGTACTAGTAGTAGATATCACCCTCAGCCCAGTAGATGGAGATAA 1461 0.5086 MSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVITLFLLSLCLTSRRRHHHHHHKHRRTTSAVPSPPISKEILEIVHVPPPPATVHLPPPKPDHPRSALYSSGESRATVSVCETASSLGSGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGTKVAVKNLLNNKGQAEREFKVEVETIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGLVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSKPQGEVNLIEWLKSMVGNRKSEEVVDPKIAEKPSSKALKRALLVALRCVDPDSAKRPKIGHVIHMLEAEDLLFRDDRRSGGESSRSHRDYQLEHKDSRLDKRQNGAEITDQSEADSTSSRYHPQPSRWR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00611 486 SUPERFAMILY Protein kinase-like (PK-like) 130 424 IPR011009 -
Pumo1g00611 486 Gene3D Phosphorylase Kinase; domain 1 133 227 - -
Pumo1g00611 486 MobiDBLite consensus disorder prediction 434 465 - -
Pumo1g00611 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Pumo1g00611 486 FunFam Probable serine/threonine-protein kinase At1g01540 132 227 - -
Pumo1g00611 486 CDD STKc_IRAK 158 424 - -
Pumo1g00611 486 MobiDBLite consensus disorder prediction 434 486 - -
Pumo1g00611 486 Pfam Protein kinase domain 155 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00611 486 ProSiteProfiles Protein kinase domain profile. 152 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00611 486 PANTHER OS01G0323000 PROTEIN 8 446 - -
Pumo1g00611 486 MobiDBLite consensus disorder prediction 466 486 - -
Pumo1g00611 486 SMART serkin_6 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00611 486 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Pumo1g00611 486 Gene3D Transferase(Phosphotransferase) domain 1 228 435 - -
Pumo1g00611 486 FunFam Putative receptor-like serine/threonine-protein kinase 228 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00611 Pumo-Chr1 9333823 9337426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00611 121 424 Receptor kinase-like Gene Family AT4G02010 45.779 1.36e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo1g00611 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00611 - - gmx:100777348 820.076