Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00599 ATGGGGGGTACCTCACCTTGTGCTTCATGCAAGTTATTGAGACGCCGTTGCTCCAAGGAATGCATATTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCTATTGTGCATAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTGAACAGTCTAGTTTATGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGATGTGTTGGAGCCATATCATATCTACAAAGCCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTATGCATCCAGATGCAGCAACAAGAGCCTACCACCTTAGCCACACAGCAAGTAGACCAAGATGACAAATCAATGCTCCTATCTGTAAACAATAATAACTACGAAATGCTTCCTCACTATCTTAACTTTCCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACCCTCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 525 0.4362 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQEPTTLATQQVDQDDKSMLLSVNNNNYEMLPHYLNFPSSSSSSSNVFQDPHEPLKRESFWT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00599 174 Coils Coil 85 105 - -
Pumo1g00599 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 138 - -
Pumo1g00599 174 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pumo1g00599 174 MobiDBLite consensus disorder prediction 154 174 - -
Pumo1g00599 174 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00599 Pumo-Chr1 9183539 9185013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00599 3 174 AS2 family AT2G30130 67.368 1.11e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo1g00599 LOB 1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00599 1 9183539 9185013 Pumo1g00599 1 9183539 9185013 ECH