Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00584 ATGACCACTTCTTTCTCTGACCTTCTTTCGTCTCCCACCACCGACCGCAACCTCGGAGGCTCCGAAAGACCTCACGAGTCGTCGGATCAAACAGGTTCTGGCGTGCCAAAATTCAAGTCCACACCCCCTCCATCTCTCCCTCTATCTAACCATCCTCTTCCACCCATTTCTCCTTCTTCTTACTTTAACATCCCTCATGGGTTAAGCCTTGCTGAACTTCTTGACTCCCCAGTTCTCCTTAACTCTTATAACGTTTTGCCATCTCCAACAACTGGATCATTTGCTGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGGGAAATCCAGCAGCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAAACACACCCTCCTCTTCCATCTTCAACTGGATTTCAATCTTCAACCGGCATAGTTCAAACCGGATGGAGTTTTCCAGAAACTGCTAAACAAGATGGTTTTTCTTCAAGAATGAGTATGAGCATGGTGAAAACTGAAAGCTCTTCTGGGATGCAGAGTTTCAACCCTGATCAGAATAACCACAGGAATGGTTTCCAATCAGATCATAACAATTACCAACCACAAGTTCAGACCTTGAGCAGAAGGCTTCCAAGAGGAACTCATTGTCTGCCTCTTCATCACTTGCAATTCCTCATCCAAATCATGGCAGCAATGAAATACCACATCAAATGGATTCCGGTTGCCACTCCAGAAAACTCATCAATATCAATGGAGGATGATGATTTTGGTCATAGTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCAGTAGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCAAGGATGTCCAGTGAGGAAGCATGTAGAGAGAGCTTCACATGACCTACGGGCAGTGATCACAACCTATGAGGGAAAACACAACCATGACGTGCCTGCAGCACGTGGCAGTGGCAGCAACAATTCTATCAGTAGATCATTGCCAATAACCAATACCACAAACAACACCACTAGTGCAGCCACTTCTAGATACACTAACAATTCTATTCAGAGTCTTAGACCACCAGCACCATCAGAAAGGCAGCCACATTTCAACCCCAATATGCAGCAGAGCTCAGGAAGTTTTGGATTCTCAGGGTTTGGAAATCCATTAATGGGGTCTTACATGAATCAGCAATCTGACAATGTTTTCACCTCTAGATCAGCCAAGGAGGAGCCTGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1422 0.4416 MTTSFSDLLSSPTTDRNLGGSERPHESSDQTGSGVPKFKSTPPPSLPLSNHPLPPISPSSYFNIPHGLSLAELLDSPVLLNSYNVLPSPTTGSFAGQGFNWKSSYGEIQQHVKEEDKSFSSFSFQTQTHPPLPSSTGFQSSTGIVQTGWSFPETAKQDGFSSRMSMSMVKTESSSGMQSFNPDQNNHRNGFQSDHNNYQPQVQTLSRRLPRGTHCLPLHHLQFLIQIMAAMKYHIKWIPVATPENSSISMEDDDFGHSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFQGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNNSISRSLPITNTTNNTTSAATSRYTNNSIQSLRPPAPSERQPHFNPNMQQSSGSFGFSGFGNPLMGSYMNQQSDNVFTSRSAKEEPGDDSFLDSLLC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00584 473 Gene3D WRKY domain 295 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g00584 473 ProSiteProfiles WRKY domain profile. 303 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00584 473 MobiDBLite consensus disorder prediction 1 52 - -
Pumo1g00584 473 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 399 IPR044810 GO:0003700
Pumo1g00584 473 Pfam WRKY DNA -binding domain 309 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00584 473 SMART WRKY_cls 308 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g00584 473 MobiDBLite consensus disorder prediction 119 139 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 116 139 - -
Pumo1g00584 473 SUPERFAMILY WRKY DNA-binding domain 300 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g00584 473 MobiDBLite consensus disorder prediction 159 204 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 1 38 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 250 270 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 370 411 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 248 270 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 454 473 - -
Pumo1g00584 473 FunFam WRKY transcription factor 33 295 361 - -
Pumo1g00584 473 MobiDBLite consensus disorder prediction 363 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00584 Pumo-Chr1 9016208 9019037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00584 246 374 WRKY Transcription Factor Family AT2G38470 75.758 1.28e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo1g00584 WRKY 2.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00584 K13424 - gmx:100127421 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00584 1 9016208 9019037 Pumo1g00584 1 9016208 9019037 ECH