Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00578 ATGGCAAATTACCTAAAGACACCCCTTGTCCTTGATATGAAGGATGTTGTGATAGTTAAACCCTCCAAGCCCACACCATCTGAACTTCTTTCTTTGTCCACCATTGACAGTGACCCAGTTCTCAACATTCTGTGTCAAACAATTTATGTCTACAAAGCAAATGTTGATTCCCCAAATGGCCAACTAGACCCTGCTCATGTGATAAAAGAAGCCCTCTCAAAGACCTTGGTTTACTATTATCCTCTTGCTGGAAAGATAGTAACATTTGATGATGGAAAACTTGGAATCAACTGCAATGCTGATGGAGTTCCATTCTTGGAGGCAACTGCTAACTGTGAACTCTCTTCTCTTCACTATCTTGAAGGGATTGATGTTCCAACTGCACAGAAATTGGTGTTTGATAACCCTTCTCAAGATGGAACTAGTCACCACCCCTTGGCTTTCAAGGTGACCAAGTTTCTCTGTGGGGGTTTCACCCTTGGAATGGGCTTGTCACACAGTGTTTGTGATGGGTTTGGTGCATCTCAATTCTTCAGAGCCTTGGCTGAACTTGCATGTGGAAAAAGTGAGCCCTCAGTGAAACCTGTGTGGGAGAGGAAGAGACTAATGGGGACACTTCTTAAGGAGCCTCTCCAATTTCCCATAGATGAGACCTCAAGGGCAGTTTCACCATTTTGGCCAACTAAGGAGATTTCACATGAATGCTTTAACTTAGACGGTAAGAGCATACAAAGACTGAAAATGGAACTGATGAAGGAAAGTGATGATGTGAAGGAAAGCTTCACAACTGTTGAAACACTTGGTGCCTATGTTTGGAGGTCAAGAGCTAGAGCTTTGGAATTGAGCTGTGATGGGAAAACTATGCTGTGTTTAGCAGTAGGGGTGAGGCACCTATTGGATCCACCTTTGCCTGAAGGGTATTATGGGAATGCTTTTGTCGGTTCAAATGTGGTGCTAACAGTGAAAGAACTTGATGAAAGACCACTCTCAGAGGTTGTGAAGCTCATCAAAGAGAGCAAAAAGCTTCCTTCTAATAATGAGTACATCAGAGGCACAATAAACATGTTGGAGACAATGAGACAAAGGAACATTAGGGTTGAAGGAACATGTGCATCAGTGGTGTTAACAGATTGGAGGCAGCTGAGTTTGATGGAAGAAGTGGATTTTGGATGGAAGGCTTCAGTGAATATAGTACCAGTTCCATGGAACATGTTAGGGTATGTGGACTTGTGCCTTTTCTTGCCTCCTAGTAATTTGGATCCTTCAATGAAAGGAGGAGTAAGGGTCTTTGTTTCCCTCCCCAAAGCTTGCATGCCCAAGTTCAGGGAGGAGATGGAGGCCCTCAAGCTTATCAGAGGTGATGAGGGTAGCACCTAG 1377 0.4379 MANYLKTPLVLDMKDVVIVKPSKPTPSELLSLSTIDSDPVLNILCQTIYVYKANVDSPNGQLDPAHVIKEALSKTLVYYYPLAGKIVTFDDGKLGINCNADGVPFLEATANCELSSLHYLEGIDVPTAQKLVFDNPSQDGTSHHPLAFKVTKFLCGGFTLGMGLSHSVCDGFGASQFFRALAELACGKSEPSVKPVWERKRLMGTLLKEPLQFPIDETSRAVSPFWPTKEISHECFNLDGKSIQRLKMELMKESDDVKESFTTVETLGAYVWRSRARALELSCDGKTMLCLAVGVRHLLDPPLPEGYYGNAFVGSNVVLTVKELDERPLSEVVKLIKESKKLPSNNEYIRGTINMLETMRQRNIRVEGTCASVVLTDWRQLSLMEEVDFGWKASVNIVPVPWNMLGYVDLCLFLPPSNLDPSMKGGVRVFVSLPKACMPKFREEMEALKLIRGDEGST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00578 458 Gene3D - 227 445 IPR023213 -
Pumo1g00578 458 PANTHER ACYL TRANSFERASE 4 12 447 - -
Pumo1g00578 458 Gene3D - 10 210 IPR023213 -
Pumo1g00578 458 Pfam Transferase family 17 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00578 Pumo-Chr1 8980128 8981751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00578 11 443 Monolignol Biosynthesis Gene Families AT5G48930 28.319 1.17e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00578 K20240 - gmx:100801843 862.062