Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00566 ATGGTAGCATTGATGCTGAACAAAATGCTGAATTGGAAAGGAGATGTATACTCCCAAGTATTGGGAGAAGAAAGAAGTGGCTATGTTCGTGGCTTGGGACTTGGTCCAACTCCTTCTCAATTATGGGGTACTAAATCTAATATTCTTTCTAGTAACATGACTAATGAGCTAGTACAAATGTTGGAGCAAGAATTGAGGGAGTTAAAGAAGTCAAAGGAGAAACATGATGAAGAAATGGATTTGATGAAACAAAATCAAGACAAGTTAGTATCGGAGTTATCTTTCATGAGAAAAGTGTTAAAATATTTTCCTAAGGAGTTATCTATGGCTCAAAACTTTGGAAGCTCATTTGGACAGGTCTATGATACTAATAGTGGTTTTGAACAAGCACATTATGTTGAAAAGAAAATTCCAACTCCTCAAGGTAATATGTTCAAGCCAAGTGGTTCAATCAAGCCTGAGGACCAGGCTTCTGATTTTGATGTGCTTCTTACTGGTGCTAATGAGACCTTCCATTCAATCAAGCTATTCATGTATTTCACAGGATTAGCACTTGAAGCTTTGGCTGGAGTGATCTCTTTAGCATCTTCTGAAACTGATATTAAGTATGATGAGATCAATGGTATCATGAAAGATTTTGATGAACTTGACCATCTTACTTCTACTGGCCTCCACCTTGGGGACACCAAATGCATGGTAATCCAAGAAGAGCCAGAAGCCATCATTTGTGGAAAGAAGAATGTGGACCCTAAAATTGAAAAAAGGAAGAAAAGTACTGCTTCTGTTGATGACATCACTTCCTTGCTAAAGCTTGTGAGAAAAGATAATGATGATGCTGTTCGAAAACTAGCAGCAGAGGCACTTGTCAGTCTTGCCACAGATGTCTTTCTTGTTTCTTACCAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTTTTGGATTCAGCAGGCTTCCATGGAATGATGTGA 987 0.3911 MVALMLNKMLNWKGDVYSQVLGEERSGYVRGLGLGPTPSQLWGTKSNILSSNMTNELVQMLEQELRELKKSKEKHDEEMDLMKQNQDKLVSELSFMRKVLKYFPKELSMAQNFGSSFGQVYDTNSGFEQAHYVEKKIPTPQGNMFKPSGSIKPEDQASDFDVLLTGANETFHSIKLFMYFTGLALEALAGVISLASSETDIKYDEINGIMKDFDELDHLTSTGLHLGDTKCMVIQEEPEAIICGKKNVDPKIEKRKKSTASVDDITSLLKLVRKDNDDAVRKLAAEALVSLATDVFLVSYQQCREGQDVLPEQIKAVLLDSAGFHGMM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00566 328 Coils Coil 51 92 - -
Pumo1g00566 328 Gene3D Dynein light chain 2a, cytoplasmic 180 262 - -
Pumo1g00566 328 PRINTS Profilin signature 199 219 IPR005455 GO:0003779
Pumo1g00566 328 PRINTS Profilin signature 223 237 IPR005455 GO:0003779
Pumo1g00566 328 Pfam Profilin 193 247 IPR005455 GO:0003779
Pumo1g00566 328 SUPERFAMILY Profilin (actin-binding protein) 180 247 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00566 Pumo-Chr1 8786946 8789184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00566 191 262 Cytoskeleton Gene Families AT4G29350 44.444 6.41e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00566 - - ccaj:109811479 168.703