Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00559 ATGGGAACACCGTGTTCTCATGCTGTTTGTATTCAATCGACTCTTTTAACACTTCTTGTGTTGAAAGAGACAGAAGAGTTGTGCCGTCAATTTTCTCTGTCTGATCTTAGGAAATCAACCAACAACTTTGATCAAAACAGAGTAACTGGACGTGGAGCATTTAGTGAAGTGTACAAAGGTTGTCTCCAACATAACAATGTTTCTGACTATGTAGTCGCAGTGAAGCATTTTTCTCGGGGCAGTCAAGGATGGAGGGAGTTTAGGAATGAAATTAAGTTGCTCTGCCAGCTTCGTCACCCTAATGTTGTCTCTCTTATAGGATTCTGCAACAACAAAAAGAAGAAGATTATTGTGTACGAGTACATCTCCAATGGATCTCTATATGAACAACTTGACACACTGTCATGGAGGAAAAGGTTAGAGATATGCATAGGAGCAGCGCGTGGACTACACTACCTTCACGCTGGAGCCAAACGCACCATCATTCACCGTGACATCAAATCTATCAACATTCTTTTGGGTCAATCAATTTAA 534 0.4101 MGTPCSHAVCIQSTLLTLLVLKETEELCRQFSLSDLRKSTNNFDQNRVTGRGAFSEVYKGCLQHNNVSDYVVAVKHFSRGSQGWREFRNEIKLLCQLRHPNVVSLIGFCNNKKKKIIVYEYISNGSLYEQLDTLSWRKRLEICIGAARGLHYLHAGAKRTIIHRDIKSINILLGQSI 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00559 177 ProSiteProfiles Protein kinase domain profile. 43 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00559 177 Pfam Protein tyrosine and serine/threonine kinase 46 175 IPR001245 GO:0004672|GO:0006468
Pumo1g00559 177 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Pumo1g00559 177 Gene3D Transferase(Phosphotransferase) domain 1 122 177 - -
Pumo1g00559 177 Gene3D Phosphorylase Kinase; domain 1 8 121 - -
Pumo1g00559 177 FunFam Receptor-like protein kinase ANXUR2 12 121 - -
Pumo1g00559 177 PANTHER OS07G0166700 PROTEIN 27 175 IPR045272 GO:0004714|GO:0006468
Pumo1g00559 177 SMART serkin_6 43 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00559 177 SUPERFAMILY Protein kinase-like (PK-like) 26 175 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00559 Pumo-Chr1 8186020 8187098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00559 27 175 Receptor kinase-like Gene Family AT3G51550 49.032 2.26e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Pumo1g00559 PK_Tyr_Ser-Thr 3.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00559 - - gmx:100786461 218.779