Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00557 ATGCCTAGTATTTACAATGCTCTAGTAGTTAAGGGTCGAGATACCATTGGTCAACAAATTAACGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGTTATGAGTGCTACAGATGGTCTAACGAGAGGAATGGAAGTGAGTGACACAGGAGCTCCCCTAAGTGTTCCAGTAGGTGGAGCAACTCTAGGACAAATTTTCAACGTGCTTGGAGAGCCCATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCCATTCATAGATCTGCGCCTGCCTTTATACAATTAGATACAAAATTATCCATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTGATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGTGGGGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTGACTATGGCGGAATATTTTCGAGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATATTCCGCTTCGTCCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACTAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTAACCGATCCCGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCGGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAGACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGACGAATTATCCGAAGAAGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTTTTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAATTTGAAGAAATGA 1380 0.4036 MPSIYNALVVKGRDTIGQQINVTCEVQQLLGNNRVRAVVMSATDGLTRGMEVSDTGAPLSVPVGGATLGQIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESNLKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00557 459 Gene3D - 1 58 - -
Pumo1g00557 459 PANTHER ATP SYNTHASE 1 456 - -
Pumo1g00557 459 Gene3D - 59 335 IPR027417 -
Pumo1g00557 459 FunFam ATP synthase subunit beta 336 455 - -
Pumo1g00557 459 Hamap ATP synthase subunit beta [atpB]. 1 451 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pumo1g00557 459 ProSitePatterns ATP synthase alpha and beta subunits signature. 324 333 IPR020003 GO:0005524
Pumo1g00557 459 Gene3D - 336 459 IPR024034 -
Pumo1g00557 459 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 113 333 IPR000194 GO:0005524
Pumo1g00557 459 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 58 IPR036121 GO:0046034|GO:1902600
Pumo1g00557 459 FunFam ATP synthase subunit beta 40 385 - -
Pumo1g00557 459 CDD ATP-synt_F1_beta_C 340 447 - -
Pumo1g00557 459 FunFam ATP synthase subunit beta 59 335 - -
Pumo1g00557 459 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 336 451 - -
Pumo1g00557 459 Pfam ATP synthase alpha/beta family, beta-barrel domain 2 56 IPR004100 GO:0046034|GO:1902600
Pumo1g00557 459 NCBIfam F0F1 ATP synthase subunit beta 1 451 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pumo1g00557 459 SMART AAA_5 125 317 IPR003593 GO:0016887
Pumo1g00557 459 CDD F1-ATPase_beta_CD 60 338 - -
Pumo1g00557 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 338 IPR027417 -
Pumo1g00557 459 CDD ATP-synt_F1_beta_N 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00557 Pumo-Chr1 7480531 7481910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00557 112 397 Primary Pumps ATPases(2) AT1G78900 29.836 5.36e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00557 K02112 - pvy:33127525 878.241