Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00556 ATGGTTGGACTGCACATACATACAGCAAAGCAGATGGAGTGCTCAAAGGAAAACCATGTGCCTCCGCTCATACCCTCTTCAAATCTTCAAGGCGGTCGAAGAATGAAGCCCCTCCATCACCGGCTGCCTCTTGGCAACATCAATCAGAATGGTATGGCTAACAAAATCCCTGCTCATGCCAACAAACTAGATCTTTCCCGGATCTGTGAAACTGTGCCAGCTGGAGCTCTGTCCTTCTTGATCGAGCTTTGCTTGGTGGAGTGCAAAATGCTGAAGTTTCCACCATCTTTGCTAGCTGCTGCAGCCATATACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCAGTGAGTGGTATACTGATTACTCAGAAGAGCTGCTTCTAGATGATCATCCTGAAAGTGTTCTGTCATCCATGCAAACTATAATGGTGGTTCTCTTAGAAGAGAGTGAGGATGTCCTTGAGGATCTTTTATCTATTCTACTGTCTAAATTAGGTCGTGAAAAAAAATTGATCTCAAAGTCTCCACTAGTGGTTGAAACTTCAGAAGACCTACCATCTCTAAAACGTATGAAAACTGAGCAGTGCACCCACTCCATTAATCCTGAATATGACAATTCTTCTTCATCTGTTCTTCCAAATTGTGACTCACGAGATTCGACGGATACTCAGTGCCAAGCCTATTCCAGTGGTGACATGTCTATATCAACTAAATCTGAGCTTACTGAAGTTAAAGCAGAAGTTCTGGTGCATTCAATTCATGAAAATCTTAGCGAGACAAAAATGGACGAGGATAGTGCACATGATAAAAGGCCCACTGAAAGTGGACAAGATAAGCAAGAAAATGTGACCCAGCCATCTGAACATGGAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCATTGACTGAGCTGTTTACTCCTGAGCAAGTCGGGGAACATATCACTGACCTCAGGCGATGGGTTGGCCAATGGGTTCAATGTGATAAATGTGAGGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTAAATACACTTGCCGTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGTGCAAGCCCTTACCCCAAAGTGCTGTTCTTGGAGCCAAGGATTTACCAAGAACAATTCTCAGTGACCACATAGAGCAACGATTATTTAGGAGACTAAAGCACGAAAGACAAGAGAGGGTCCGACTTCAAGGGAAAAGTTATGATGAGGTGACTAACTGA 1284 0.4338 MVGLHIHTAKQMECSKENHVPPLIPSSNLQGGRRMKPLHHRLPLGNINQNGMANKIPAHANKLDLSRICETVPAGALSFLIELCLVECKMLKFPPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTDYSEELLLDDHPESVLSSMQTIMVVLLEESEDVLEDLLSILLSKLGREKKLISKSPLVVETSEDLPSLKRMKTEQCTHSINPEYDNSSSSVLPNCDSRDSTDTQCQAYSSGDMSISTKSELTEVKAEVLVHSIHENLSETKMDEDSAHDKRPTESGQDKQENVTQPSEHGAGTKSGKPKIKGVSLTELFTPEQVGEHITDLRRWVGQWVQCDKCEAWQHQICALFNGRRNDGGQAKYTCRNCYIQEVERGECKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKHERQERVRLQGKSYDEVTN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00556 427 Pfam Cyclin, C-terminal domain 78 130 IPR004367 -
Pumo1g00556 427 MobiDBLite consensus disorder prediction 259 303 - -
Pumo1g00556 427 Pfam PHD-finger 330 367 IPR019787 -
Pumo1g00556 427 PANTHER CBP/P300-RELATED 179 331 IPR013178 GO:0004402|GO:0006355|GO:0016573
Pumo1g00556 427 MobiDBLite consensus disorder prediction 259 281 - -
Pumo1g00556 427 Gene3D - 63 211 - -
Pumo1g00556 427 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 384 427 IPR031162 GO:0004402
Pumo1g00556 427 SMART Cyclin_C_2 55 182 IPR004367 -
Pumo1g00556 427 MobiDBLite consensus disorder prediction 203 238 - -
Pumo1g00556 427 SUPERFAMILY Cyclin-like 77 133 IPR036915 -
Pumo1g00556 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 384 IPR013083 -
Pumo1g00556 427 SUPERFAMILY FYVE/PHD zinc finger 329 368 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00556 Pumo-Chr1 7475747 7480339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00556 79 132 Core Cell Cycle Gene Families AT1G20610 61.111 9.37e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo1g00556 Cyclin_C 5.1e-14 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00556 K04498 - gmx:100800511 272.707