LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00553	ATGGTTACTTTTAATATATTTCATTCCCTGCTTCTTCCAACAGCTTTCTTTGCAGACATAAGCTCATTTCTACTGTTGTACCCACTATATTTCAGTGAAAAAGATGCGGAACATTCGATTCTCTATAGCTACAAGTATAGTTTCTCGGGGTTTTCAGCAATGCTAAATCCAACCCAAGCAGCTACACTAGCTAATATGCGAGAAGTGGTGTCAGTTTTCAGGAGCAAGTCATCACAATCACACACAACAAGAAGCTGGGATTTCTTGGACCTTAACTTGGACAGTAGTGAAGTAACGCCATTGCAGCTAATTTATGGTGAAGACATCATTGTTGGGGTATTAGACACAGGCGTATGGCCAGAATCAGAAAGTTTCCGGGAAGATCCTAGCATCGGTCCTATTCCACTAACGTGGAAGGGAGAATGTGTCAAGGGGGAGAGATTCGAACCTGCAGCAGCATGCAACCGGAAGTTAATTGGTGCTCGTTACTACCTGAAAGGTTTTGAACAGGAATATGGACCGCTGAATACAACAGGGAACTTTGAGTATCAATCACCTCGAGATTTTGTTGGCCATGGAACACATACAGCTTCAACAGCAGTAGGGTCCATAGTGGAAGATACAAGCTTCTTTAACTTAGGAAATGGCACTGCCCGGGGTGGTGCTCCAAGGGCTCGTTTGGCGGTATATAAAGTATGTTGGAACATAGAATATTATGGAAGATGCTCGGAAGCAGATATAATGGCAGCTTTTGATGACGCTTTGCATGATGGTGTACACGTTATCTCGGCCTCCTTTGGTCCAATTCCACCACTAGTTCCCTTCTTCAAAGATAGTTCCAGTATTGGTTCGTTCCATGCAATGCAACTGGGTGTGACAGTGGTATTCTCGGCAGGAAACTATGATGAGTCACCCGAGCCATCTCTAGTTGGAAATGTTGAACCATGGTCCATCTGCGTGGCCGCTTCATCGCTTGATAGAACGTTCCCCACAAAAATAATCGTTGGTGATAATGTTTACATGGGAGAAGGCTTGATTACCACACAAATAAAGGCAAAATTGGCGGATGCAAGCACATATTTTTACAATGGGATCTGCAAGATGGACTACATTAAGCCATCAAAAACAGGTGTGGGGAGGATTGTGCTCTGCTTCTCTACAATAGGCCCAAAATTAAGTTTAGAAGCAGCAGCAGCAGTGAAGGCAGTGAATGCAACGGGATTGATTTTTGTGGAACCTATGTCAAGGCAATTGCCTGACGTTGAAGTCGTTCCCACAGTCTTTGTCAATTTGGAAGAAGGAACTAAAATTAAGTATTATCTTGCTGAATCTCCTAGGCTCCCGAAAGTGCAAATAGAACCAAGTAAAACAGTCATTGGCAAGGCACCAGCGCCCACAATTGCATATTTTTCGTCTAGAGGGCCTAGCTCAATCACACCCGACATTCTCAAGCCAGACATTAGCGCTCCAGGAGTAAATATTTTAGCAGCATGGCCTCCCGAAACTCCTCCCTCGCCATCATCCAGTGACGGACGTTCTGTGAAGTGGAATTTTCAATCAGGAACATCAATGGCATGCCCTCACGTGGCCGGTGTTGCTGCCCTGATCAAATCTGCCCATCCAAGCTGGTCTCCTGCTGCCATTAGATCTGCTCTCATGACAACAGCATATACTCTGGACACAACCTTGGACAGTATTCTTGCTGGTGGATCAATGAAAGTAGCGAATCCTTTTGACATGGGTGCTGGCCACATAAACCCTTCAAAAGCAGTTGATCCAGGACTAATCTACGATATCAAATCTACTGATTACATTAGTTTCCTCTGTAATATTGGCTTCAACCAAGAGCAGATAAATAAAATCACTAATCATCCCTCTCCAGAACCTGTTCACACAAGCTGCAAACACTTGGTAACCAAAACCAATGCCATTCTAAACTACCCATCAATCACACTCTCAAACCTCCACTCTACAGTAACAATCAAAAGGACTGTTCGTAATGTGGGTCGAAACAAAAATGTAATATATTTTGTTAGCATCTTCGAACCCTTTGGAGTGGAGGTTGTGATATGGCCGAAGATCCTAATATTCTCATGGTTCAAGCAAGAAAACTCATACTACGTGACTCTAAAGCCCAAAAAGGAATCACAAGGTAGGTATGATTTCGGAGAGATAGTTTGGTCAGACGGCTTCCATTATGCTAGGAGTCCATTGGTTGTACGTGTTAATACTTCTGGTTCTGGTTTCCACGGATCCAACTACTACTCATACTAG	2274	0.4367	MVTFNIFHSLLLPTAFFADISSFLLLYPLYFSEKDAEHSILYSYKYSFSGFSAMLNPTQAATLANMREVVSVFRSKSSQSHTTRSWDFLDLNLDSSEVTPLQLIYGEDIIVGVLDTGVWPESESFREDPSIGPIPLTWKGECVKGERFEPAAACNRKLIGARYYLKGFEQEYGPLNTTGNFEYQSPRDFVGHGTHTASTAVGSIVEDTSFFNLGNGTARGGAPRARLAVYKVCWNIEYYGRCSEADIMAAFDDALHDGVHVISASFGPIPPLVPFFKDSSSIGSFHAMQLGVTVVFSAGNYDESPEPSLVGNVEPWSICVAASSLDRTFPTKIIVGDNVYMGEGLITTQIKAKLADASTYFYNGICKMDYIKPSKTGVGRIVLCFSTIGPKLSLEAAAAVKAVNATGLIFVEPMSRQLPDVEVVPTVFVNLEEGTKIKYYLAESPRLPKVQIEPSKTVIGKAPAPTIAYFSSRGPSSITPDILKPDISAPGVNILAAWPPETPPSPSSSDGRSVKWNFQSGTSMACPHVAGVAALIKSAHPSWSPAAIRSALMTTAYTLDTTLDSILAGGSMKVANPFDMGAGHINPSKAVDPGLIYDIKSTDYISFLCNIGFNQEQINKITNHPSPEPVHTSCKHLVTKTNAILNYPSITLSNLHSTVTIKRTVRNVGRNKNVIYFVSIFEPFGVEVVIWPKILIFSWFKQENSYYVTLKPKKESQGRYDFGEIVWSDGFHYARSPLVVRVNTSGSGFHGSNYYSY	757

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00553	757	SUPERFAMILY	Subtilisin-like	81	595	IPR036852	GO:0004252\|GO:0006508
	Pumo1g00553	757	Pfam	Peptidase inhibitor I9	33	77	IPR010259	-
	Pumo1g00553	757	Gene3D	Peptidase S8/S53 domain	108	604	IPR036852	GO:0004252\|GO:0006508
	Pumo1g00553	757	PRINTS	Subtilisin serine protease family (S8) signature	520	536	IPR015500	-
	Pumo1g00553	757	PRINTS	Subtilisin serine protease family (S8) signature	106	125	IPR015500	-
	Pumo1g00553	757	PRINTS	Subtilisin serine protease family (S8) signature	188	201	IPR015500	-
	Pumo1g00553	757	Pfam	Fibronectin type-III domain	645	740	IPR041469	-
	Pumo1g00553	757	Gene3D	-	326	459	-	-
	Pumo1g00553	757	ProSiteProfiles	Serine proteases, subtilase domain profile.	85	591	-	-
	Pumo1g00553	757	Gene3D	-	608	743	-	-
	Pumo1g00553	757	Pfam	Subtilase family	106	561	IPR000209	GO:0006508\|GO:0008236
	Pumo1g00553	757	ProSitePatterns	Serine proteases, subtilase family, serine active site.	521	531	IPR023828	-
	Pumo1g00553	757	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	37	740	IPR045051	-
	Pumo1g00553	757	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	9	81	IPR037045	-
	Pumo1g00553	757	FunFam	Subtilisin-like protease SBT1.5	108	336	-	-
	Pumo1g00553	757	CDD	Peptidases_S8_3	81	557	IPR034197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00553	Pumo-Chr1	7391930	7395802	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00553	32	746	Subtilisin-like Serine Gene Family	AT4G26330	59.085	0.0	846

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00553	-		-	qsu:112038682	1012.68