Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00552 ATGGAGGAAACAACGGCAGCTAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATGTGGAAATCAAATGCCCGTTTTGCCGACGTGGATTCGTTGAAGAAATGGGTAACGCCCCCAGTAGCAGCAACATTCACAATACATCAGAAGCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCGTCGAAGACTCAGACAAATAGACAATGATGATGACTATGATAATGGTAATCGTGATGATGTTGATGGTGTAGCAGATCATGGTGGAGAAACTGAATATGATCAAGAGCTTGAGTCCATCCTTCGGAGGAGAAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAGCTGGACTGGCATCTGAATCATATGAGAATACTGACGGTGATGACCATGACAGGGAAAGAGAAAGAGAGAGAGAGCGCGTGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTACGAGTCAAACCAGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGAGTGATTATTTCATAGGGCCTGGTTTGGATATATTGTTACAACATTTGGCTGAGAATGATCCCAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTGACAATCAATGAGAATTTGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCTAAGGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGTAGGCTTCAGTTGCCAGTGGATGAATCTAAGCAAGACTCTGATGTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGCTGAAGAAAGAGATGGTGAAGGGAGAAATACAGGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCGAACTCTTCATCCTCTTACAGTTCCAATGCAAATGGAAATGATAATCAATCAGATGAAAACTGA 1101 0.4378 MEETTAARYWCHMCSQMVNPIMDVEIKCPFCRRGFVEEMGNAPSSSNIHNTSEADFESDRALSLWAPILLGMMGNPRHRRRLRQIDNDDDYDNGNRDDVDGVADHGGETEYDQELESILRRRRRNSATILQLLQGIRAGLASESYENTDGDDHDRERERERERVILINPLNQTIIVQGSYESNQDQSDNHSSVGSLSDYFIGPGLDILLQHLAENDPNRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPVDESKQDSDVSRDSRSQREDESIEHDNAEERDGEGRNTGGGRRFSFPWPFNGLFSSSNSSSSYSSNANGNDNQSDEN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00552 366 MobiDBLite consensus disorder prediction 85 106 - -
Pumo1g00552 366 Pfam Ring finger domain 243 285 IPR001841 -
Pumo1g00552 366 SUPERFAMILY RING/U-box 233 293 - -
Pumo1g00552 366 MobiDBLite consensus disorder prediction 292 327 - -
Pumo1g00552 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 291 IPR013083 -
Pumo1g00552 366 SMART ring_2 244 284 IPR001841 -
Pumo1g00552 366 FunFam E3 ubiquitin-protein ligase RING1-like 211 291 - -
Pumo1g00552 366 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Pumo1g00552 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 154 289 - -
Pumo1g00552 366 CDD RING-H2_RNF126-like 243 285 - -
Pumo1g00552 366 MobiDBLite consensus disorder prediction 345 366 - -
Pumo1g00552 366 MobiDBLite consensus disorder prediction 292 333 - -
Pumo1g00552 366 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00552 Pumo-Chr1 7380898 7383298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00552 108 291 C3H Transcription Factor Family AT1G26800 37.634 8.95e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00552 - K11982 gmx:100784876 575.474