Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00552 | ATGGAGGAAACAACGGCAGCTAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATGTGGAAATCAAATGCCCGTTTTGCCGACGTGGATTCGTTGAAGAAATGGGTAACGCCCCCAGTAGCAGCAACATTCACAATACATCAGAAGCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCGTCGAAGACTCAGACAAATAGACAATGATGATGACTATGATAATGGTAATCGTGATGATGTTGATGGTGTAGCAGATCATGGTGGAGAAACTGAATATGATCAAGAGCTTGAGTCCATCCTTCGGAGGAGAAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAGCTGGACTGGCATCTGAATCATATGAGAATACTGACGGTGATGACCATGACAGGGAAAGAGAAAGAGAGAGAGAGCGCGTGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTACGAGTCAAACCAGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGAGTGATTATTTCATAGGGCCTGGTTTGGATATATTGTTACAACATTTGGCTGAGAATGATCCCAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTGACAATCAATGAGAATTTGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCTAAGGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGTAGGCTTCAGTTGCCAGTGGATGAATCTAAGCAAGACTCTGATGTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGCTGAAGAAAGAGATGGTGAAGGGAGAAATACAGGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCGAACTCTTCATCCTCTTACAGTTCCAATGCAAATGGAAATGATAATCAATCAGATGAAAACTGA | 1101 | 0.4378 | MEETTAARYWCHMCSQMVNPIMDVEIKCPFCRRGFVEEMGNAPSSSNIHNTSEADFESDRALSLWAPILLGMMGNPRHRRRLRQIDNDDDYDNGNRDDVDGVADHGGETEYDQELESILRRRRRNSATILQLLQGIRAGLASESYENTDGDDHDRERERERERVILINPLNQTIIVQGSYESNQDQSDNHSSVGSLSDYFIGPGLDILLQHLAENDPNRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPVDESKQDSDVSRDSRSQREDESIEHDNAEERDGEGRNTGGGRRFSFPWPFNGLFSSSNSSSSYSSNANGNDNQSDEN | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00552 | 366 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
Pumo1g00552 | 366 | Pfam | Ring finger domain | 243 | 285 | IPR001841 | - | |
Pumo1g00552 | 366 | SUPERFAMILY | RING/U-box | 233 | 293 | - | - | |
Pumo1g00552 | 366 | MobiDBLite | consensus disorder prediction | 292 | 327 | - | - | |
Pumo1g00552 | 366 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 291 | IPR013083 | - | |
Pumo1g00552 | 366 | SMART | ring_2 | 244 | 284 | IPR001841 | - | |
Pumo1g00552 | 366 | FunFam | E3 ubiquitin-protein ligase RING1-like | 211 | 291 | - | - | |
Pumo1g00552 | 366 | ProSiteProfiles | Zinc finger RING-type profile. | 244 | 285 | IPR001841 | - | |
Pumo1g00552 | 366 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 154 | 289 | - | - | |
Pumo1g00552 | 366 | CDD | RING-H2_RNF126-like | 243 | 285 | - | - | |
Pumo1g00552 | 366 | MobiDBLite | consensus disorder prediction | 345 | 366 | - | - | |
Pumo1g00552 | 366 | MobiDBLite | consensus disorder prediction | 292 | 333 | - | - | |
Pumo1g00552 | 366 | Pfam | zinc-ribbon | 8 | 39 | IPR039525 | GO:0061630 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00552 | Pumo-Chr1 | 7380898 | 7383298 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00552 | 108 | 291 | C3H Transcription Factor Family | AT1G26800 | 37.634 | 8.95e-29 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00552 | - | K11982 | gmx:100784876 | 575.474 |