Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00546 ATGAGAGGAAGGAGCTATAGTCCATCGCCTCCTCCGCGTTATAGCAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGTCCCAGCCCTAGGGGCCGCTATCCTCCCCGTCCCAGACAACAAGATCTTCCTACCAGCCTTCTTGTTCGTAACCTACGCCATGACTGTAGGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAGGACATTTACCTCCCTAAGGATTACTACACTGGAGAACCCCGTGGCTTTGGTTTTGTCCAATATGTTGATCCCGCGGATGCTGCTGACGCTAAATATCATATGGATGGTCAAATTCTTCTTGGTCGGGAGCTCACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCAAGAGAGAGAAGGGGTCGGTTTTATGATCGAAGAAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTACTCTCAATCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAGTATTCAAGGTATTTGGCCTGTAATAATTAA 597 0.5075 MRGRSYSPSPPPRYSRRGGGGGGGGGGGGGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPRYSQSPPPRHRSRSRSRDYYSPPPKRREYSRYLACNN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00546 198 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 188 - -
Pumo1g00546 198 MobiDBLite consensus disorder prediction 1 53 - -
Pumo1g00546 198 Gene3D - 38 192 IPR012677 -
Pumo1g00546 198 FunFam Serine/arginine-rich SC35-like splicing factor SCL30A 44 160 - -
Pumo1g00546 198 SMART rrm1_1 53 126 IPR000504 GO:0003723
Pumo1g00546 198 MobiDBLite consensus disorder prediction 172 186 - -
Pumo1g00546 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Pumo1g00546 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Pumo1g00546 198 SUPERFAMILY RNA-binding domain, RBD 51 157 IPR035979 GO:0003676
Pumo1g00546 198 MobiDBLite consensus disorder prediction 132 198 - -
Pumo1g00546 198 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00546 Pumo-Chr1 7299250 7302475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00546 52 183 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 3.00e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00546 K12900 - gmx:100775883 230.335