Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00546 | ATGAGAGGAAGGAGCTATAGTCCATCGCCTCCTCCGCGTTATAGCAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGTCCCAGCCCTAGGGGCCGCTATCCTCCCCGTCCCAGACAACAAGATCTTCCTACCAGCCTTCTTGTTCGTAACCTACGCCATGACTGTAGGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAGGACATTTACCTCCCTAAGGATTACTACACTGGAGAACCCCGTGGCTTTGGTTTTGTCCAATATGTTGATCCCGCGGATGCTGCTGACGCTAAATATCATATGGATGGTCAAATTCTTCTTGGTCGGGAGCTCACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCAAGAGAGAGAAGGGGTCGGTTTTATGATCGAAGAAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTACTCTCAATCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAGTATTCAAGGTATTTGGCCTGTAATAATTAA | 597 | 0.5075 | MRGRSYSPSPPPRYSRRGGGGGGGGGGGGGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPRYSQSPPPRHRSRSRSRDYYSPPPKRREYSRYLACNN | 198 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00546 | 198 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 51 | 188 | - | - | |
Pumo1g00546 | 198 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Pumo1g00546 | 198 | Gene3D | - | 38 | 192 | IPR012677 | - | |
Pumo1g00546 | 198 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL30A | 44 | 160 | - | - | |
Pumo1g00546 | 198 | SMART | rrm1_1 | 53 | 126 | IPR000504 | GO:0003723 | |
Pumo1g00546 | 198 | MobiDBLite | consensus disorder prediction | 172 | 186 | - | - | |
Pumo1g00546 | 198 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 54 | 123 | IPR000504 | GO:0003723 | |
Pumo1g00546 | 198 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 52 | 130 | IPR000504 | GO:0003723 | |
Pumo1g00546 | 198 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 157 | IPR035979 | GO:0003676 | |
Pumo1g00546 | 198 | MobiDBLite | consensus disorder prediction | 132 | 198 | - | - | |
Pumo1g00546 | 198 | MobiDBLite | consensus disorder prediction | 132 | 156 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00546 | Pumo-Chr1 | 7299250 | 7302475 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00546 | 52 | 183 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.515 | 3.00e-10 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00546 | K12900 | - | gmx:100775883 | 230.335 |