Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00544 ATGGGAGAAATAGAAAGAGAGGTGATGCCATTTAGGTGGGAGAAGGAGGAAGAAGAAGAAGAAGCACAAGCCCAGATGGATATCTGGAAGTACATATTTGGGTTTGTGGAACTGGCAGTGGTGAAATGTGCGATTGAGCTTGGCATAGCTGAAGCTATAGAGAAGCATGGAAGTCCGATGACAGTATCGGAGATATCATCAACTCTAGGGTGTGATCCTTCACTTCTTAACCGCATAATGAGGTTCCTAGTGCACCGAAAGATATTCAAAGCCATACCCACCAGCCACAGCCACAGCCACGGGTATTCATATTCTCAAACAGCTCTGTCTCGCCGTTTGATGAGAAGCGGCGAACATAGCATGGCTGCTTTACTTTTGCTGGAGAGTAGTCCTGTTATGCTGGCACCTTGGCACAGTCTAAGTGCTCGCGTCATGGCCAATGGCAATCCCTCCTTTGCAAAGGCTCACGGTGAAGACGTGTGGCACTATGCTGCCGCAAATCTCGACCACAGCAACCTCATCAATGAAGCAATGGCATGTGATGCTAAGCTTGTTATGCCTATCATCATTCAAAGTTGCAGCGAGGCATTTGATGGCCTCAAGTCCTTGGTGGATGTGGGTGGGGGAAACGGCACCACCATGCGCATCCTCGCTAAGGCTTGCCCTTGGATTCGAGCCATCAATTTTGATCTTCCTCATGTCATTGCCGAGGCTCCTCAATGCGATGCCGTCCAACATGTGCCAGGCGACATGTTTCTAAGTGTTCCCAAAGCGGATGCTGTTTTTCTTATGTGGGTTTTGCACGATTGGTCAGACGAAGAGTGCATCCAAATCTTAAACAAGTGTAGGGAAGCCATTCCAAAGGAAAATGAAAATGGAAGGGTTATTATTGTGGAGGCGGTGATCGAAGAAGAAGAAGAAGGGAAAAAGCATAACCGGTTGAAGGATGTAGGATTGATGCTGGACATGGTAATGATGGCGCACACTAACTTCGGCAAAGAGCGCACACTCAAAGAGTGGGAATATGTCATCAAAATGGCAGGATTTAGCGCATTCACTGTCAAACCCATTCATGCCGTGCAGTCCGTGATTATGGCTTTCTACTAA 1107 0.4761 MGEIEREVMPFRWEKEEEEEEAQAQMDIWKYIFGFVELAVVKCAIELGIAEAIEKHGSPMTVSEISSTLGCDPSLLNRIMRFLVHRKIFKAIPTSHSHSHGYSYSQTALSRRLMRSGEHSMAALLLLESSPVMLAPWHSLSARVMANGNPSFAKAHGEDVWHYAAANLDHSNLINEAMACDAKLVMPIIIQSCSEAFDGLKSLVDVGGGNGTTMRILAKACPWIRAINFDLPHVIAEAPQCDAVQHVPGDMFLSVPKADAVFLMWVLHDWSDEECIQILNKCREAIPKENENGRVIIVEAVIEEEEEGKKHNRLKDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSAFTVKPIHAVQSVIMAFY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00544 368 Gene3D Vaccinia Virus protein VP39 115 367 IPR029063 -
Pumo1g00544 368 FunFam O-methyltransferase family protein 115 367 - -
Pumo1g00544 368 Pfam O-methyltransferase domain 137 350 IPR001077 GO:0008171
Pumo1g00544 368 CDD AdoMet_MTases 203 288 - -
Pumo1g00544 368 Pfam Dimerisation domain 40 84 IPR012967 GO:0046983
Pumo1g00544 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 364 IPR029063 -
Pumo1g00544 368 PIRSF O-mtase 7 368 IPR016461 GO:0008168
Pumo1g00544 368 SUPERFAMILY "Winged helix" DNA-binding domain 18 116 IPR036390 -
Pumo1g00544 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Pumo1g00544 368 FunFam O-methyltransferase family protein 12 113 - -
Pumo1g00544 368 PANTHER O-METHYLTRANSFERASE 38 352 IPR016461 GO:0008168
Pumo1g00544 368 Gene3D - 11 113 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00544 Pumo-Chr1 7288408 7289589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00544 41 354 Monolignol Biosynthesis Gene Families AT5G54160 35.604 9.85e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00544 K22588 - gmx:100782951 576.63