Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00540 ATGGCAACCTCGAGATTTACTTACGGCAGCCGCAACGCAACGGTTTCTCGATCTTGGTCAATAATCGTCTCCATTTCAGTCAGGGTTTTAGTCTTCCCAATACAGGGTGAGGGCGTGGAAGCACACAAGACAAGCATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCCGCGTCTGAAAATGCGGGAACCTCTAACTCCACAGCTCCTTCGAGGCCCGTTTATGTGCCTCCGCATCTGAGGAACCGTGGGCCATCAGAATCCTCTGCTCCACCACCAGCCAATAATAATAATAATAATAATGCAGGAGGATCACGGTGGGGTGCTCTGCCGCCCAGAAACGGATGGGGGAACAGAAGCGGTGGTGGTGGTGGTTGGGATCGTCGCGAAGTGAATCCCTTTGGAGATCAGGAGGATGCAGCAGCAGAAGAGGCAGCGTTTGGCGAGGAGGAGCAGGAAAACACGGGAATTAATTTTGATGCGTACGAGGACATTCCGGTGGAGACGAGCGGTGAAAACGTGCCCCCGCCTGTTAATACTTTTGCTGAGATTGACTTGGGCGATGCGCTTAATCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCGGTTCAGCGACATACTATACCCATATCCCTTGCGGGCCGGGATTTGATGGCATGTGCGCAGACTGGTTCTGGAAAGACTGCTGCATTCTGTTTCCCAATCATCAGTGGGATTATGAGAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCCCTCCAGAGGCCCCCTCGTGGCCTCCGTACAGTCTACCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTGCGGGAACTTGAGAGAGGGGTGGATATCCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATCTGGCCTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCGCCAGGTGCCAGACAGACTATGCTGTTCAGTGCTACATTTCCAAAAGAGATACAGAGACTAGCGTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAGGGCAAACGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACGAAGAAGGGAGCTGATGCTCTAGAGCACTGGTTGTGTCGTAATAGTTTTCCAGCAACGACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATAGGAAGGACAGGCCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAGGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAATGCAGGAAACAACAGTAGTGGATATGGCACTTCTGGTGGGTATGGTGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTAA 1941 0.4874 MATSRFTYGSRNATVSRSWSIIVSISVRVLVFPIQGEGVEAHKTSMRTSWADLAANSASENAGTSNSTAPSRPVYVPPHLRNRGPSESSAPPPANNNNNNNAGGSRWGALPPRNGWGNRSGGGGGWDRREVNPFGDQEDAAAEEAAFGEEEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRAQAQAQAQAQPLQRPPRGLRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRYAARSSFGGGRNRRSGGGRFGGRDFRREGSFSRGGSDYYNAGNNSSGYGTSGGYGGGYGPGVTSAWD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00540 646 Gene3D - 406 585 IPR027417 -
Pumo1g00540 646 FunFam Probable ATP-dependent RNA helicase DDX4 140 405 - -
Pumo1g00540 646 Gene3D - 134 405 IPR027417 -
Pumo1g00540 646 CDD DEADc_DDX3_DDX4 180 409 IPR044763 GO:0003724|GO:0005524
Pumo1g00540 646 MobiDBLite consensus disorder prediction 626 646 - -
Pumo1g00540 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 403 IPR014001 -
Pumo1g00540 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 581 IPR001650 -
Pumo1g00540 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 560 IPR027417 -
Pumo1g00540 646 CDD SF2_C_DEAD 415 551 - -
Pumo1g00540 646 SMART helicmild6 461 542 IPR001650 -
Pumo1g00540 646 MobiDBLite consensus disorder prediction 585 605 - -
Pumo1g00540 646 MobiDBLite consensus disorder prediction 57 72 - -
Pumo1g00540 646 FunFam ATP-dependent RNA helicase RhlB 406 585 - -
Pumo1g00540 646 MobiDBLite consensus disorder prediction 88 105 - -
Pumo1g00540 646 Pfam DEAD/DEAH box helicase 203 392 IPR011545 GO:0003676|GO:0005524
Pumo1g00540 646 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Pumo1g00540 646 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 145 581 - -
Pumo1g00540 646 Pfam Helicase conserved C-terminal domain 427 542 IPR001650 -
Pumo1g00540 646 SMART ultradead3 198 418 IPR014001 -
Pumo1g00540 646 MobiDBLite consensus disorder prediction 57 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00540 Pumo-Chr1 7259589 7264896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00540 177 574 Eukaryotic Initiation Factors Gene Family AT3G19760 30.326 1.63e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00540 K11594 - gmx:100784557 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00540 1 7259589 7264896 Pumo1g00540 1 7259589 7264896 ECH