Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00528 ATGGCCTTGTGTAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTACATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTTCTGGCTTTGGAGATGTGGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCGGCACTCTCTGCAATGGATGGGCAGGATCTGAATGGGCGAAGCATTCGGGTATCCTATGCAAATGATAGACCTTCTGGACCTCGATCTGGTGGCGGTGGCGGTTATGGTGGTGGGGGTTATGGTGGTGGTTATGCTTCTCGTAATGGTGGTTGGTGA 432 0.4745 MALCNKVGNVLRQGAARSTQAPVTSMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVEARVITDRDTGRSRGFGFVNFSNDESASSALSAMDGQDLNGRSIRVSYANDRPSGPRSGGGGGYGGGGYGGGYASRNGGW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00528 143 FunFam Glycine-rich RNA-binding protein 2 25 143 - -
Pumo1g00528 143 SUPERFAMILY RNA-binding domain, RBD 33 141 IPR035979 GO:0003676
Pumo1g00528 143 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pumo1g00528 143 Gene3D - 28 143 IPR012677 -
Pumo1g00528 143 MobiDBLite consensus disorder prediction 110 132 - -
Pumo1g00528 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pumo1g00528 143 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 139 - -
Pumo1g00528 143 CDD RRM2_NsCP33_like 37 112 - -
Pumo1g00528 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00528 Pumo-Chr1 7132659 7134665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00528 1 124 Eukaryotic Initiation Factors Gene Family AT4G34110 37.903 1.29e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00528 - - gmx:100499841 232.646