Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00521 ATGGAAGGATCGGGTTCAGGGTCAGGTCCTGCACCGTTCCTACTGAAAACTTACGAGATGGTGGATGATTCATCTACGGAGGAGATAGTATCATGGAGCTCCACCAACAACAGCTTCATCGTCTGGAACCCAGCTGATTTCTCTCGTCTTCTTCTTCCCACCTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAGTACACCCTGAGCGATGGGAGTTTGCTAATGAAGATTTTCTGAAAGATCAAAAGCATCTTCTTAAGAATATTCACCGCAGGAAACCTATACACAGTCACACACATCCTGTTGTGGATTCAGAAAGGTCAGCATTTGAGGAAGAAATAGAAAAACTTTCACACGACAAAACCACCATTCAATCCAATATTTTTCGCTTCAAACAACACCACTCCGCTGCGAAGACTCATCTCGAAGATCTTCAGCAGCGATTGGATGGCATGGAGGATAGGCAGAAAATTTTGCTCACCTTCTTTCAAAAGGCTCTTCACAATCCCACTCTTGTTCAACAAATTTCTCGCAAAATCGATTCCATGGATTTGTTGGCATATAACAAGAAAAGGCGATTACCTCAGGTTGATGACCATGATCATCACTTGCAGCCTGTTGCTGTTGACAGTTTTGGAATTGGAAATATTTCTCATCAAGATTTCTCCAATAAACTCACACTGGAACTGTCACCTGCTGTTTCGGATATGAACTTGGTGGTGTCATGTAGTACACACAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATGCTACCTGCTGAGACAGCAGAGCTTGCACAAACTGGACCATCTTTTACTTTTAACATGGATTCGTGTTTATCGCAAACAGCAACAGCTGCTGAGAGCCCCAAATTGGACTCAAATTGTGATGATAGTGACAGTTATATATCCTGCCTTTTAAATCTAACTCTGGCATCTTCTCCATTACAAGTCAAGAGAAATTCACCACCCCAAATAGACTGTCCAGAATTTGGCAAATTAGAAGAATCAAAATTTTGTGCCAGTGATAACAAGGTATCTGATGTTGGAGCTTCTTCAAGCAGAAATCTAAACGAGGTTACTAATTTAGCTGAGGCTCCCCCAACTGCTCCAGTCAGAGTAAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGATGTCCAGACAATGAAGACTCAATGTCCACCTATACAGTTCATGGAGTTTCTGGAAATGTTATGGATATGGATCAGCTGACACTCTGA 1284 0.4198 MEGSGSGSGPAPFLLKTYEMVDDSSTEEIVSWSSTNNSFIVWNPADFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFLKDQKHLLKNIHRRKPIHSHTHPVVDSERSAFEEEIEKLSHDKTTIQSNIFRFKQHHSAAKTHLEDLQQRLDGMEDRQKILLTFFQKALHNPTLVQQISRKIDSMDLLAYNKKRRLPQVDDHDHHLQPVAVDSFGIGNISHQDFSNKLTLELSPAVSDMNLVVSCSTHSSNEDGESPHKMLPAETAELAQTGPSFTFNMDSCLSQTATAAESPKLDSNCDDSDSYISCLLNLTLASSPLQVKRNSPPQIDCPEFGKLEESKFCASDNKVSDVGASSSRNLNEVTNLAEAPPTAPVRVNDVFWEQFLTERPGCPDNEDSMSTYTVHGVSGNVMDMDQLTL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00521 427 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g00521 427 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g00521 427 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g00521 427 Coils Coil 145 165 - -
Pumo1g00521 427 Gene3D - 7 103 IPR036388 -
Pumo1g00521 427 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Pumo1g00521 427 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g00521 427 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g00521 427 FunFam Heat shock transcription factor 1 6 103 - -
Pumo1g00521 427 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 241 IPR027725 -
Pumo1g00521 427 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00521 Pumo-Chr1 7065667 7067084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00521 13 410 HSF AT4G13980 50.580 4.73e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo1g00521 HSF_DNA-bind 2.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00521 K09419 - gmx:100816484 543.117