Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo1g00517 | ATGTTAGTCAATAACTCAGTTCCCACTTCGGAGCCGTTTTCCTGCTCCGAGAATGGTACTGCCACTAACAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAAACACCGGTGGTGAAGAAGCGAGTGTTTGTTTGCCCTGAGCCTACTTGTTTGCACCATGACCCATGCCATGCTCTCGGTGATCTTGTTGGCATTAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAACAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACATGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGAGGTTGGGGTCAGAAGCGCAGGCAGCTGCATGCTTGTCTCGAACTGCTTCAAGCCCATCAAGCGAAACAAATTTCAGCACAGCAGGCCCTTGGCAAAGTGGTGTAATAATTCCAAAGCCCACCGCCGTAACAGTAGAATTAACGAACCCTACCATTGTCACTGCCGATACCAACAACAAAGACCAACTCCACCCCAACCTGGATCTTCAGCTCTCTACAGCCACTCCTACACAGTTGCAGCAGCTATCCATAGGGAAGAAGGAAAGGCGGGTTCAAGAAGAGGCACGTGAGCAATTGAGGATAGCGATGGCGGAGAAAGCGTTCGCGGAAGAGGCAAGGAAGCAAGCCAAGAAGCAGATCGAACTCGCGGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAACAAGCGCTTGCCGAACTCGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAACAGATCAATTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCATTTTCAATCCTCTCCCCCGGCCTCCGACCAAAACTCTTTCGTCTTCAGCTACATAACAACACAAGCTCCCCAAGTAGAAAAACATCGTGTCAAAGCCATTATTAACTCTTAG | 1164 | 0.5043 | MLVNNSVPTSEPFSCSENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGSEAQAAACLSRTASSPSSETNFSTAGPWQSGVIIPKPTAVTVELTNPTIVTADTNNKDQLHPNLDLQLSTATPTQLQQLSIGKKERRVQEEAREQLRIAMAEKAFAEEARKQAKKQIELAELEFTNAKRIRQQALAELDKAYALKDHAIKQINSTMLQITCLACKHHFQSSPPASDQNSFVFSYITTQAPQVEKHRVKAIINS | 387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo1g00517 | 387 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 76 | IPR036236 | - | |
| Pumo1g00517 | 387 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Pumo1g00517 | 387 | Pfam | Zinc-finger of C2H2 type | 53 | 71 | - | - | |
| Pumo1g00517 | 387 | Coils | Coil | 273 | 321 | - | - | |
| Pumo1g00517 | 387 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 15 | 344 | IPR031140 | - | |
| Pumo1g00517 | 387 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
| Pumo1g00517 | 387 | Gene3D | Classic Zinc Finger | 31 | 94 | - | - | |
| Pumo1g00517 | 387 | Gene3D | Classic Zinc Finger | 115 | 192 | - | - | |
| Pumo1g00517 | 387 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 75 | IPR013087 | - | |
| Pumo1g00517 | 387 | FunFam | protein indeterminate-domain 12-like | 32 | 100 | - | - | |
| Pumo1g00517 | 387 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
| Pumo1g00517 | 387 | SMART | c2h2final6 | 94 | 124 | IPR013087 | - | |
| Pumo1g00517 | 387 | SMART | c2h2final6 | 130 | 157 | IPR013087 | - | |
| Pumo1g00517 | 387 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo1g00517 | Pumo-Chr1 | 6948331 | 6950360 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo1g00517 | 17 | 371 | C2H2 Transcription Factor Family | AT2G01940 | 56.127 | 5.35e-143 | 412 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pumo1g00517 | zf-met | 0.021 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo1g00517 | K25871 | - | gmx:100798167 | 606.29 |