Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00512 ATGGCCTTGTGTAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTGCATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTTCTGGCTTTGGAGATGTGGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCGGCACTCTCTGCAATGGATGGGCAGGATCTGAATGGGCGAAGCATTCGGGTATCCTATGCAAATGATAGACCTTCTGGACCTCGATCTGGTGGCGGTGGCGGTTATGGTGGTGGGGGTTATGGTGGTGGTTATGCTTCTCGTAATGGTGGTTGGTGA 432 0.4769 MALCNKVGNVLRQGAARSTQAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVEARVITDRDTGRSRGFGFVNFSNDESASSALSAMDGQDLNGRSIRVSYANDRPSGPRSGGGGGYGGGGYGGGYASRNGGW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00512 143 FunFam Glycine-rich RNA-binding protein 2 25 143 - -
Pumo1g00512 143 SUPERFAMILY RNA-binding domain, RBD 33 141 IPR035979 GO:0003676
Pumo1g00512 143 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pumo1g00512 143 Gene3D - 28 143 IPR012677 -
Pumo1g00512 143 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 139 - -
Pumo1g00512 143 MobiDBLite consensus disorder prediction 110 132 - -
Pumo1g00512 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pumo1g00512 143 CDD RRM2_NsCP33_like 37 112 - -
Pumo1g00512 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00512 Pumo-Chr1 6786412 6788425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00512 35 124 Eukaryotic Initiation Factors Gene Family AT4G34110 42.222 3.06e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00512 - - gmx:100499841 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00512 1 6786412 6788425 Pumo1g00512 1 6786412 6788425 ECH