Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00497 ATGGCTGACCCGAAATTAAAATCGAAAAGTCTAGTTTGTGTCTCTAAAGTCTTGCTGTGTTTCAGTCTGCTGTGCACCGCCATTGCCGACGATGGCGCGTTCATGTCGAAGCTGGCGAAGGCTTTGAGCCCAACGCCGTCGGGGTGGTCCGGGAGCAGCTTCTGCGACTGGAAGGGCGTGAAGTGCAGCTCCAACCGCGTGACCTCAATCAACATCGCTTCCCAGTCACTCAGCGGAACGCTCCCTCCGGATCTGAACACGCTCTCCCAACTCACCTCGCTCTCTCTCCAGAACAACGCCCTCTCCGGTGCGTTGCCTTCACTCGCGAACCTCTCCATGCTCGAAACCGTGTTCCTCGGCACCAACACCTTCACCTCCGTCCCCGACGGTTGCTTCCAGGGGCTCACCAGTCTACAAACCCTCAGCATGACCGACAGCATCAACCTCGCGCCCTGGGCGTTTCCCACCGAGTTGACTCAGTCCTCCAACCTCGTCAAACTCGAACTCGGTAACGCAAACCTCATCGGTACCTTGCCTGATGTATTCAACCAGTTCGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACCGGGGGTTTACCCAAGACCTTCGCGGGATCTGGGATTCAGAATCTGTGGCTCAACAATCAGAAAGACGGGTTCGGGTTTTCGGGTACCATTGAGGTGCTTGCTTCCATGACCCACTTGTCTCAGGTGTGGCTTCACAAGAACCTGTTTACGGGCCCCATTCCCGATTTGTCAAATTGCACCACTCTGTTTGATCTGCAGCTCTGGGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTGATGTCCCTTTCTAGTTTGCAGAACGTTTCTTTAGACAACAACTTGCTTCAGGGTCCTGTTCCTTCCTTTGGGAATGGTGTCAAGGTCACTCTCGGTGAGATCAATAGTTTTTGTCTGAAAGATGTTGGACCCTGTGATTCTCGTGTCACCATTTTGCTTGATATTGCTAAGGATTTCGGGTATCCCCCTCAATTGGCGCGTTCCTGGACTGGGAACGATCCTTGTGATGATTGGAGTTTCCTTGTGTGTGCAGAGGGGAAGATTATTACGGTGAATTTGGCTAAGCAGAATTTGAATGGAACCATTTCACCTGCATTTGCTAATTTAACTGATTTGAGAAACTTGTTTCTCAATAATAATAACTTGGGTGGTTCAATACCGGGAAGTTTGACAAATTTGGCTCAGCTTGAGGTTCTGGATGTGTCTAATAATAACCTATCTGGTGATGTTCCAAAGTTCTCAGGCAAGGTGAAGTTCACTACTGCAGGTAATGATGTGCTTGGGCGTTCTGATGGTGGTGGTGGTGGTGGTGGAACTACTCCGTCGAAGGGTTCTGGTGATGCACCGAGTGGAAGTCCAAGCGCGGGGTCAAGTGGATCTTCACTTTCACCTGCTTGGATAGCAGGTATTGTTGTTATTGCTGTGTTCTTTGTTGCAGTGGTGGTGTTTGTCATTTGCAAGTGTCATGCTAAAAACCGGCATGGGAAGTTTGGAAGGGTTAATAATCTAGATAACGGAAAAGGAGTTGTTCCGAGTTTTGAGCCAGGTGAAAGTGTTACCATGTCAATTCAATTTCTTCGGCAAGTAACAAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGAGAATTGCATGATGGAACTCAAATTGCTGTGAAGAGGATGAAATCTGGTACAATGGGAAGTATGGGAAGGAATGAGTTCCAAGCAGAGATTGCTTTTCTCAGTAAAGTCAGGCACAGGCATTTGGTGGCTCTTTTAGGGTATTGCATTAACGGCAGCGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATCTGTTCTGTTGGCGTGAAAATGGCTGTACTCCTTTGACTTGGAAACAAAGGGTAGCCATAGCTTTGGATGTAGCACGAGGAGTGGAATACTTGCACCGCCTAGCTCAGCAAAGCTTCATTCATAGGGACTTAAAACCCTCAAACATATTATTGGGAAATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAAATGCGCCAGATGGGATGAATTCTGTCTCGACACGAGTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCTACTGGAAGAGTGACGATCAAAGCAGATGTGTACGCATTTGGAATAGTTTTGATGGAACTGATTACCGGTAGAAAGGCATTGGACAATACTGTGCCCGAAGAAATGTCTCACTTAGCTTCATGGTTCCGTAGGATACTAATTAACATAGAAAATATTCCAATGGCAACTGATCAAACTCTCAACCCGGACGAGGAAACCAATGAGAGCATATATAAAGTTGCTGAGCTGGCAGGCCATTGCACTGCTCCTGAACCACACCAAAGGCCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCTCTGGTAGAGCAATGGAACCCAACCTGCAGCCATGAGGAAGAAGGTTATGACATGATCAATGAAGGCACTTATGACATGTCCTTCTCGGAAATTCTATCTGGCCGTTGA 2598 0.4754 MADPKLKSKSLVCVSKVLLCFSLLCTAIADDGAFMSKLAKALSPTPSGWSGSSFCDWKGVKCSSNRVTSINIASQSLSGTLPPDLNTLSQLTSLSLQNNALSGALPSLANLSMLETVFLGTNTFTSVPDGCFQGLTSLQTLSMTDSINLAPWAFPTELTQSSNLVKLELGNANLIGTLPDVFNQFVSLQELRLSYNNLTGGLPKTFAGSGIQNLWLNNQKDGFGFSGTIEVLASMTHLSQVWLHKNLFTGPIPDLSNCTTLFDLQLWDNQLTGVVPPSLMSLSSLQNVSLDNNLLQGPVPSFGNGVKVTLGEINSFCLKDVGPCDSRVTILLDIAKDFGYPPQLARSWTGNDPCDDWSFLVCAEGKIITVNLAKQNLNGTISPAFANLTDLRNLFLNNNNLGGSIPGSLTNLAQLEVLDVSNNNLSGDVPKFSGKVKFTTAGNDVLGRSDGGGGGGGTTPSKGSGDAPSGSPSAGSSGSSLSPAWIAGIVVIAVFFVAVVVFVICKCHAKNRHGKFGRVNNLDNGKGVVPSFEPGESVTMSIQFLRQVTNNFSEDNILGRGGFGVVYKGELHDGTQIAVKRMKSGTMGSMGRNEFQAEIAFLSKVRHRHLVALLGYCINGSERLLVYEYMPQGTLTQHLFCWRENGCTPLTWKQRVAIALDVARGVEYLHRLAQQSFIHRDLKPSNILLGNDMRAKVADFGLVKNAPDGMNSVSTRVAGTFGYLAPEYAATGRVTIKADVYAFGIVLMELITGRKALDNTVPEEMSHLASWFRRILINIENIPMATDQTLNPDEETNESIYKVAELAGHCTAPEPHQRPDMGHAVNVLVPLVEQWNPTCSHEEEGYDMINEGTYDMSFSEILSGR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00497 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Pumo1g00497 865 FunFam Receptor-like kinase TMK4 29 322 - -
Pumo1g00497 865 FunFam Leucine-rich repeat receptor-like kinase 326 449 - -
Pumo1g00497 865 Pfam Protein kinase domain 553 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00497 865 Gene3D Transferase(Phosphotransferase) domain 1 630 855 - -
Pumo1g00497 865 Gene3D Phosphorylase Kinase; domain 1 520 629 - -
Pumo1g00497 865 Pfam Leucine rich repeat N-terminal domain 32 63 IPR013210 -
Pumo1g00497 865 Pfam Leucine rich repeat N-terminal domain 328 362 IPR013210 -
Pumo1g00497 865 Gene3D Ribonuclease Inhibitor 325 450 IPR032675 -
Pumo1g00497 865 Pfam Leucine rich repeat 89 144 IPR001611 GO:0005515
Pumo1g00497 865 Gene3D Ribonuclease Inhibitor 32 321 IPR032675 -
Pumo1g00497 865 SUPERFAMILY Protein kinase-like (PK-like) 530 828 IPR011009 -
Pumo1g00497 865 FunFam receptor protein kinase TMK1 630 847 - -
Pumo1g00497 865 PANTHER OSJNBA0070M12.3 PROTEIN 14 861 - -
Pumo1g00497 865 FunFam receptor-like protein kinase FERONIA 520 629 - -
Pumo1g00497 865 MobiDBLite consensus disorder prediction 443 475 - -
Pumo1g00497 865 SMART serkin_6 552 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00497 865 CDD STKc_IRAK 558 831 - -
Pumo1g00497 865 ProSiteProfiles Protein kinase domain profile. 552 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00497 865 SMART LRR_typ_2 111 134 IPR003591 -
Pumo1g00497 865 SMART LRR_typ_2 388 411 IPR003591 -
Pumo1g00497 865 SMART LRR_typ_2 412 434 IPR003591 -
Pumo1g00497 865 SMART LRR_typ_2 88 110 IPR003591 -
Pumo1g00497 865 SMART LRR_typ_2 185 208 IPR003591 -
Pumo1g00497 865 ProSitePatterns Protein kinases ATP-binding region signature. 558 580 IPR017441 GO:0005524
Pumo1g00497 865 SUPERFAMILY L domain-like 33 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00497 Pumo-Chr1 6568929 6572604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00497 81 831 Receptor kinase-like Gene Family AT5G65700 32.439 8.07e-90 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo1g00497 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00497 - - gmx:100781851 1305.43